Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30g00003 ATGGAAGCTGAAGCTGATCCTCCTGAAACTGAAAACCCACCCAAAAGACACAAATGCTCTGCATGCTATAAGCAGTACAAGAAAAAGGAGCATCTTATTGAGCACATGAAAATCTCTTACCACTCTTCTCATCAGCCTAGATGTGGGGTTTGTCAAAAGCACTGCAAATCTTTTGAGTCTCTCAGGGAACATCTTACCGGTCCTCTGCCAAAAGGACTTTGTTCGACAATTTTCTCTCAACAAGGCTGTCAACTTTGCTTGTCACTATTTGATAGCGCCGTATCTCTCAGGGAGCATTTAGAAACATGCCGCCTATCTTCCCCTGCTCCTATGGGAACAGAAGCAATGCCCTATATAAGCTCCCAAATTGACTATCAAGATTCTTCTGATGAAAATGGTGCTGGCGGACGTCCTAGAGCAATTGCGATGGATTGTGAAATGGTTGGTGGTGGGAGTGATGGAACGCTGGAAATTTGTGCAAGAGTATGCTTGGTTGATGAAGATGAGAATTTAATCTTCCACACATATGTACAGCCAATAATCCCTGTTACTAACTACAGATATGATATAACTGGGTTGACCGAAGAGAATCTTAGACATGCTATGCCACTGAAGGAAGTTCAGGAGAAGATATTACAAATTCTATACAATGGAGAATCCATTGGCGGAGTTCTACGTGGGGGGAAGGCCAGGCTTCTTGTGGGGCATGACTTAGAACATGATTTAGATAGCTTGAAAATGAATTATCCCGAACACTTGATGAGGGACACTGCAAAGTATCGACCATTGATGAAGACAAACTTGGTTAGCCATTCGCTCAAGTATCTTACCCGAACATATCTAGGTTATGATATCCAGAGCGGCGCTCATGATCCATATGAAGACTGTGTTTCTGCGATGAGACTTTATGAGAGAATTCGAGGTCAAATTCACAAGGAGGAACACTATGGAACATTGACTTCCAATAAAAACAGCATAGGCAAGTCAAATTGTTGGCAATCCGAAGAAGTAAAGAACCTCACACCTGATGAACTATATGGCATGTCGAAATCAGACTACAGATGTTGGTGTTTGGATTTGAGACCAAACTTGGCACCCTGA 1101 0.426 MEAEADPPETENPPKRHKCSACYKQYKKKEHLIEHMKISYHSSHQPRCGVCQKHCKSFESLREHLTGPLPKGLCSTIFSQQGCQLCLSLFDSAVSLREHLETCRLSSPAPMGTEAMPYISSQIDYQDSSDENGAGGRPRAIAMDCEMVGGGSDGTLEICARVCLVDEDENLIFHTYVQPIIPVTNYRYDITGLTEENLRHAMPLKEVQEKILQILYNGESIGGVLRGGKARLLVGHDLEHDLDSLKMNYPEHLMRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGAHDPYEDCVSAMRLYERIRGQIHKEEHYGTLTSNKNSIGKSNCWQSEEVKNLTPDELYGMSKSDYRCWCLDLRPNLAP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30g00003 366 CDD REX4_like 141 303 IPR037431 GO:0006364|GO:0008408
Stsc30g00003 366 Gene3D - 136 324 IPR036397 GO:0003676
Stsc30g00003 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 17 46 IPR013087 -
Stsc30g00003 366 SMART exoiiiendus 139 312 IPR013520 -
Stsc30g00003 366 ProSitePatterns Zinc finger C2H2 type domain signature. 19 41 IPR013087 -
Stsc30g00003 366 Gene3D Classic Zinc Finger 2 67 - -
Stsc30g00003 366 SUPERFAMILY Ribonuclease H-like 140 306 IPR012337 -
Stsc30g00003 366 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 19 311 IPR047021 GO:0004527
Stsc30g00003 366 Pfam Exonuclease 141 303 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30g00003 Stsc-Chr30 11821 15129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30g00003 16 359 C2H2 Transcription Factor Family AT3G27970 54.728 1.61e-139 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30g00003 K18327 - gmx:100805841 588.186