Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30g00001 ATGGCAGTAATGGAAGAAAAGCATGCTCTCCTCCATGGAACAATTGAAGCTACCATCTTTGATGCCACACCTTACTCACCTTCATTTCCCTTTAATTGTTTATTTCCAAATGGAAAGCCTGCTTATGTGACCATCAAAATAGGCAACAAGGTGGTAGCACAAACTACACAAGAAAGAGGGCGTGTGTGGAACCAAACCTTTCAGATTCAATGTGCTCATCCATGTGATTCAACCATCACCATCACTCTGAAAACATCATGTTCCATATTGGGAAGATTCCAAATCCAGGCTCAACAACTGAAAGAAGGAAGCTTGATGAATGGTTTCCTCCCTCTCCTCATGGAAAATGGAAAACCGAGCACACAACTCAAACTGAGGTTCATATTATGGTTCAAGCCAGCAGATTTGGAGACAAGTTGGGCAAAGATAATTAGCACTGATGATTATAAAGGGATTAGTGACGCTACATTCCCACAGAGGCCTAATTGTCATGTTAAGCTCTACCATGATGCTCATCATTCACATGATTTTCAACCTCCTTTTGATCTCTGTGGACCACCAAGAAATCTGTGGGAGGATGTCTATAAAGCAATTGAAGGTGCAAAGTATTTAATCTACATTGCAGGGTGGTCCTTCAATCCCAACATGATTCTGGTTAGAGATCCTCAAACAGAAATCCCACATGCTAGAGAAGTAAAGTTGGGTGAGCTATTAAAGAGGAAAGCAGATGAAGGAGTGGCTGTGAGGATTATGATTTGGGATGATGAGACATCTTTGCCTTTTATTAAGATCAAAGGTGTTATGAATACTCATGATGAAGAAGCTTTTGCTTACTTCAAATACACAAAAGTAATATGCAGAAAGTGTCCAAGATTACACCACAAGTTCCCCACAGTCTTTACTCACCACCAGAAAACCATAACTGTGGACACCAGAGCACATGAAAACTCTGCTAATGAGAGAGAGATTATGAGCTTCTTGGGTGGAGTTGATCTGTGCGATGGCCGGTACGACACGGAGCAACACTCGTTGTTCCGAACACTTGCCAAGGAATCTCATTACCATGACTTTTACCAGACAAACATTCCAGGAGCTAGCCTCAACAAAGGAGGGCCAAGAGAGCCATGGCATGATGCTCATGCTTGTGTTACCGGTGAGGCTGCATGGGATGTTCTAACAAATTTTGAGCAAAGATGGACAAAGCAATGTGAGCCTTCTCTTCTAGTCCCGGCCAACACCTTAGTAAAGCTCTATCCTTCTTTTGCAAGCAATCCCTCGGAGAGAGATTGGAAAGTTCAGGTATACCGGTCGATCGATCATGTATCTGCCAGCCAAATGTTTAGAAAGCTTACAGTTGAGAGAAGCATACATGAGGCTTATGTTGAAGCGATTAGGCGTGCCGATAAGTTCATATACATTGAGAACCAATATTTCATTGGAGGGTGCCATCTGTGGGAGAAAGATAGATACAGTGGCTGTGGAAATTTGATTCCAGTTGAGATTGCACTCAAGGTGGTTAGTAAGATCAAAGCAAAAGAGAGGTTTGCAGTGTACATAGTGATACCGATGTGGCCGGAAGGTGTTCCTGAAAGTGAACCAGTTCAAGATATACTGCATTGGACCAGAGAAACAATGGCAATGATGTATAGGCTAATTGGAGAAGCAATACAAGAAAGTGGTGAACCTGGGCACCCAAGAGACTACTTGAATTTCTTCTGTCTTGCAAATAGGGAACAGAAGAGAGTAGATGAGTTTCTTCCACCACATTCTCCTCATCCTGAAACACAATACTGGAATGCACAGAAAAACAGAAGGTTCATGGTTTATGTCCATTCCAAGATCATGATTGTGGACGACCTATACATATTAATAGGATCTGCCAATGTGAACCAGAGATCCATGGACGGGCGACGGGACACAGAGATTGCCATAGGATGCTACCAGTCTCAACAAGATGGAGCTGAGTCTTACAAACTTATGAATCATGGTGATATTCATGCATACAGAATGTCACTGTGGTATGAACACACCCGAAGCACCGATGATCTGTTCTTGGAGCCGGAAAGGTTGGATTGCGTGCACAGAATGCGGTCAATAGGAGATAAAATGTGGCAAGTGTACAGGAATGAAGAGATTGTGGACATGGAAGGTGTGCACCTTGTAACATACCCCATTAAGGTAACACAAGAAGGGTGTGTAGAGGACATGCCTAATGGTGGGGATTATTTTCCTGATACAAAATGTTTAGTGAAAGGAAAGAGATCTAAGTTACTACCCCCTCTGTTTACCACTTAA 2295 0.4266 MAVMEEKHALLHGTIEATIFDATPYSPSFPFNCLFPNGKPAYVTIKIGNKVVAQTTQERGRVWNQTFQIQCAHPCDSTITITLKTSCSILGRFQIQAQQLKEGSLMNGFLPLLMENGKPSTQLKLRFILWFKPADLETSWAKIISTDDYKGISDATFPQRPNCHVKLYHDAHHSHDFQPPFDLCGPPRNLWEDVYKAIEGAKYLIYIAGWSFNPNMILVRDPQTEIPHAREVKLGELLKRKADEGVAVRIMIWDDETSLPFIKIKGVMNTHDEEAFAYFKYTKVICRKCPRLHHKFPTVFTHHQKTITVDTRAHENSANEREIMSFLGGVDLCDGRYDTEQHSLFRTLAKESHYHDFYQTNIPGASLNKGGPREPWHDAHACVTGEAAWDVLTNFEQRWTKQCEPSLLVPANTLVKLYPSFASNPSERDWKVQVYRSIDHVSASQMFRKLTVERSIHEAYVEAIRRADKFIYIENQYFIGGCHLWEKDRYSGCGNLIPVEIALKVVSKIKAKERFAVYIVIPMWPEGVPESEPVQDILHWTRETMAMMYRLIGEAIQESGEPGHPRDYLNFFCLANREQKRVDEFLPPHSPHPETQYWNAQKNRRFMVYVHSKIMIVDDLYILIGSANVNQRSMDGRRDTEIAIGCYQSQQDGAESYKLMNHGDIHAYRMSLWYEHTRSTDDLFLEPERLDCVHRMRSIGDKMWQVYRNEEIVDMEGVHLVTYPIKVTQEGCVEDMPNGGDYFPDTKCLVKGKRSKLLPPLFTT 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30g00001 764 CDD PLDc_pPLD_like_2 448 650 - -
Stsc30g00001 764 PIRSF PLD_plant 2 764 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc30g00001 764 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 298 336 IPR001736 GO:0003824
Stsc30g00001 764 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 41 129 IPR035892 -
Stsc30g00001 764 SMART pld_4 606 633 IPR001736 GO:0003824
Stsc30g00001 764 SMART pld_4 298 336 IPR001736 GO:0003824
Stsc30g00001 764 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 606 633 IPR001736 GO:0003824
Stsc30g00001 764 PANTHER PHOSPHOLIPASE D 7 746 IPR015679 -
Stsc30g00001 764 Pfam Phospholipase D C terminal 681 753 IPR024632 -
Stsc30g00001 764 Pfam Phospholipase D Active site motif 298 336 IPR001736 GO:0003824
Stsc30g00001 764 Pfam Phospholipase D Active site motif 609 633 IPR001736 GO:0003824
Stsc30g00001 764 Pfam C2 domain 41 112 IPR000008 -
Stsc30g00001 764 SUPERFAMILY Phospholipase D/nuclease 150 436 - -
Stsc30g00001 764 SUPERFAMILY Phospholipase D/nuclease 425 707 - -
Stsc30g00001 764 Gene3D Endonuclease Chain A 178 418 - -
Stsc30g00001 764 Gene3D Endonuclease Chain A 419 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30g00001 Stsc-Chr30 4235 7360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30g00001 33 764 Phospholipase D Gene Family (Wang group) AT1G55180 62.198 0.0 960
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30g00001 K01115 - gmx:100807431 1307.35