Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc309g00004 ATGGAGAATTGTAGCTTTGAGAAAGTAGTAGGGCTGAATCTTGAGGCAACAGAGTTAAGGCTGGGTTTGCCAGGTTGTGCTGATGAACATGATCAAAAACATTCATCATCATGCAGTTACTCGTCATCGTCATCGTCGTCGTCATCATTAAGTGGTGTTGTTAGAACCAACAAGAGATCTTCACCTGAAGAATCCATTGATGGTGGCCATGAGGAAGAGCCCAAAAGCAGCAAGAAAGCCATGATTTCTCAAAATAGCTCTAATCATGATGATGATGACCAAGACAAAAATGTCCCACCTTCAAAAGCACAAGTAGTAGTGGGGTGGCCACCAATTAGATCTTATAGGAAGAACAATGGCATACAACAACAAAAGAAGAAGGGAGAAGAGGTTATTGATGGGGTTGGTATGTATGTGAAAGTGAGCATGGCAGGTGCACCTTACTTGAGGAAGATTGATCTTAAAGTTTACAATAGCTACCAAGAATTACTCATGGCCTTGGAAAATATGTTCAAGTGCACTTTTGGTGAATATTCAGAAAGAGAAGGCTACAATGGATCTGAATTTTCTCCAACTTATGAAGACAAAGATGGTGATTGGATGCTAGTTGGAGATGTCCCATGGAACATGTTCATTTCTTCCTGCAAGAGGCTAAGAATTGTGAAAGGATCAGAAGCTAAGGGATTGGGTTGTTTATGA 699 0.4077 MENCSFEKVVGLNLEATELRLGLPGCADEHDQKHSSSCSYSSSSSSSSSLSGVVRTNKRSSPEESIDGGHEEEPKSSKKAMISQNSSNHDDDDQDKNVPPSKAQVVVGWPPIRSYRKNNGIQQQKKKGEEVIDGVGMYVKVSMAGAPYLRKIDLKVYNSYQELLMALENMFKCTFGEYSEREGYNGSEFSPTYEDKDGDWMLVGDVPWNMFISSCKRLRIVKGSEAKGLGCL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc309g00004 232 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 227 IPR003311 GO:0005634|GO:0006355
Stsc309g00004 232 MobiDBLite consensus disorder prediction 36 59 - -
Stsc309g00004 232 MobiDBLite consensus disorder prediction 25 104 - -
Stsc309g00004 232 MobiDBLite consensus disorder prediction 60 78 - -
Stsc309g00004 232 FunFam Auxin-responsive protein 132 232 - -
Stsc309g00004 232 SUPERFAMILY CAD & PB1 domains 133 220 - -
Stsc309g00004 232 Gene3D - 132 232 - -
Stsc309g00004 232 ProSiteProfiles PB1 domain profile. 136 228 IPR000270 GO:0005515
Stsc309g00004 232 Pfam AUX/IAA family 16 230 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc309g00004 Stsc-Chr309 44539 45946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc309g00004 139 229 B3 DNA Binding Superfamily AT2G46530 38.462 1.13e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc309g00004 AUX_IAA 7.8e-64 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc309g00004 K14484 - gmx:100792134 275.789