Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc309g00002 ATGGCCAATCACCATCCTTCCGAGGCTCCCGCCGATGACTTCCTCGAGCAAATCCTCGGCCTCCCGACCTTCGCCTCCGCCGACCCCGCCCTCGCCGGAGGAACCGACGCCTCCTCTCTCGCCGCCGCAGCTGCTTCTCCAGTGCCGCCGATGATGCTTCAGCTCAGCTCTGGCGACGCCTCCGCTGCGCACCTGGTCGGTGCCGCCGCAGGAGGTGGTTTCCACTCGCCGCCGATGTACCAGCTTGGCCTGAGCCTAGAGCAAGGGAAAGGAGGAGGGTTCTTGAAGCCTGAGGATGCTTCTGGAAGTGGAAAACGGTTTCGTGATGACGTCGTTGATGGAAGAGCTAAGAATGTTTTTCATGGGCAGCCCATGTCTACAACAGTTCCCACTGCTCCACATCCACCAGCAATGCGCCCTCGGGTGCGGGCTCGTAGAGGTCAGGCTACAGATCCACACAGCATAGCTGAAAGGCTGCGCAGAGAAAGAATAGCTGAAAGGATCAGGGCCTTGCAAGAGCTGGTTCCCAGTGTTAACAAGACAGATAGAGCTGCTATGCTCGATGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTTAAGGTTTTGAGCATGAGTAGGCTGGGCGGTGCCGGTGCTGTGGCTCCACTAGTAACTGATATCCCATTATCATCAGTCGAGGAAGAAGGTGGTGAGGGAAGAAACCAACCAGCTTGGGAGAAGTGGTCGAATGACGGCACAGAAAGGCAGGTAGCTAAGCTAATGGAAGAAAACGTCGGTGCGGCCATGCAGTTCCTTCAATCAAAGGCACTCTGCATCATGCCGATCTCACTAGCATCCGCGATATACCAGTCACAACCACCAGACACCTCTAGCATAGTTAAGCCAGAAACTAACCCTCCTTCATAG 912 0.5515 MANHHPSEAPADDFLEQILGLPTFASADPALAGGTDASSLAAAAASPVPPMMLQLSSGDASAAHLVGAAAGGGFHSPPMYQLGLSLEQGKGGGFLKPEDASGSGKRFRDDVVDGRAKNVFHGQPMSTTVPTAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDTSSIVKPETNPPS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc309g00002 303 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 54 282 - -
Stsc309g00002 303 SMART finulus 154 203 IPR011598 GO:0046983
Stsc309g00002 303 Pfam Helix-loop-helix DNA-binding domain 153 197 IPR011598 GO:0046983
Stsc309g00002 303 Gene3D - 143 205 IPR036638 GO:0046983
Stsc309g00002 303 FunFam Basic helix-loop-helix transcription factor 143 205 - -
Stsc309g00002 303 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 197 IPR011598 GO:0046983
Stsc309g00002 303 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 207 IPR036638 GO:0046983
Stsc309g00002 303 MobiDBLite consensus disorder prediction 121 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc309g00002 Stsc-Chr309 33033 37183 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc309g00002 74 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 81.780 4.47e-122 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc309g00002 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc309g00002 - - gmx:100797789 442.58