Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30991g00001 ATGGGTGCCACCTCATCTCCATTCTCAACCTCTGTTATATTAAACACACCACGCACCACTATCTCCAAGATTCTCTTCTCTCTCTCTCACTCCTTCTCTCTCTCTCCTTTCTCCACCGAGTCACTCACTCGTCTCGTACGGAACCACCGATTCCGCCCCGACTCCACTCAATCAGCTCGATCCAACAACATGTCTTCCACCTTCGCCGCCGCCGCAGACTCCTCCATCTCCGGCGACGCTGACTCCCCCTCCGCCGGCGAGATTATGCTCTTCGGCGTCAGGGTAGTCGTCGATTCCATGAGGAAAAGCGTCAGCATGAACAATCTCTCGCAGTACGTCCATCCTCAAGACGACTCCAACAACAACATCAAAGACGCTGCCGTCTCCGCCGCCGGTTACGCCTCCGCCGACGACGCCGCTCCTCACAACTCCGGCAAGAACCGCGAGCGCGAGCGCAAGCGAGGTGTTCCGTGGACGGAGGAAGAGCACAAGCTGTTCCTGGTGGGATTGCAGAAGGTAGGCAAAGGTGATTGGAGAGGGATCTCCAGGAACTACGTCAAGACTCGGACGCCGACGCAGGTGGCCAGCCACGCTCAGAAGTACTTCCTCCGCCGGAGCAATCTCAACCGCCGTCGCCGTAGATCCAGCCTCTTTGACATCACCACCGATTCGGTCTCTTCGATCCCAATGGAAGAAGAACAGATCCAGAATGGAGACAGTGTTTCTCATTCACAGCCTCTGTGCCCTGCAGCCCCTGAGAGTAGCAACACCAATGGATTTCCGATGGTGCCGCCGGTGTATCCGTTGGGCATTGGTGCGGGTGTGATTTCATCAGTCCAGGCTGGGAATCCAATGGAAGAACTAACTCTAGGACAAGGAAACATGGAACTGAACGCACAGACTAAACTAATGCGTCGGGTTCCGGGTCCTAAAGCCTCCACGGTGACTGATGTCGGCCCCGGCGCGAGTTCAACCCTCGACCAGCCAACACTGTCCCTGGGACTATCCTTCACATCTGATCAAAGACAGACTCCATCAAGACATTCGGCTTTCCATAGCGTCATAAGTGTTGCTTGA 1077 0.5562 MGATSSPFSTSVILNTPRTTISKILFSLSHSFSLSPFSTESLTRLVRNHRFRPDSTQSARSNNMSSTFAAAADSSISGDADSPSAGEIMLFGVRVVVDSMRKSVSMNNLSQYVHPQDDSNNNIKDAAVSAAGYASADDAAPHNSGKNRERERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDSVSSIPMEEEQIQNGDSVSHSQPLCPAAPESSNTNGFPMVPPVYPLGIGAGVISSVQAGNPMEELTLGQGNMELNAQTKLMRRVPGPKASTVTDVGPGASSTLDQPTLSLGLSFTSDQRQTPSRHSAFHSVISVA 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30991g00001 358 CDD SANT 157 202 IPR001005 -
Stsc30991g00001 358 MobiDBLite consensus disorder prediction 142 156 - -
Stsc30991g00001 358 PANTHER TRANSCRIPTION FACTOR KUA1 66 295 - -
Stsc30991g00001 358 MobiDBLite consensus disorder prediction 133 156 - -
Stsc30991g00001 358 Pfam Myb-like DNA-binding domain 157 202 IPR001005 -
Stsc30991g00001 358 FunFam transcription factor MYB1R1 156 207 - -
Stsc30991g00001 358 MobiDBLite consensus disorder prediction 237 256 - -
Stsc30991g00001 358 SMART sant 154 204 IPR001005 -
Stsc30991g00001 358 Gene3D - 156 208 - -
Stsc30991g00001 358 NCBIfam myb-like DNA-binding domain, SHAQKYF class 153 204 IPR006447 GO:0003677
Stsc30991g00001 358 SUPERFAMILY Homeodomain-like 152 207 IPR009057 -
Stsc30991g00001 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 150 206 IPR017930 -
Stsc30991g00001 358 ProSiteProfiles SANT domain profile. 153 206 IPR017884 -
Stsc30991g00001 358 ProSiteProfiles Myb-like domain profile. 150 202 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30991g00001 Stsc-Chr30991 21207 23757 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc30991g00001 Myb_DNA-binding 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30991g00001 - - aip:107632799 470.314