Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30989g00003 ATGCACCTTGGAGTCGATGATGATGGTTTTCTCCTCCAACCGATTTTCACTCGTTATGCATCTGCTTCGTTGAACCTAATCTTGCTGATTGTGTTGGTTGTGTCATGGATTTGGGAGAAATTTCATGTGAATGTGAACCATAGAAAAAGCAGTGAAAGAATTCGATTGGGAAGTACTGTTAATGATAATGGCCGTGGATTCTTGTTCTGCAAACAAGGTCCAATTTGCACCTTAGCAGCCTTAGCTATTTGTGTGTTCAACCTTGTGCTGTGCTTGCTTAGTTACTTTTACTTGTATAAAAATGATGATGGTTCCTCAAACGAAGTTATTATTGCAATTTCTGATTTTGCTATCAGAACACTTGGTTGGGCTGTTGTTTGTGGTTATTTGCAATTTCGAAGCTCTGATTCTTCAGGACCCTGCTTCTCAAGTTTTTTCTTGAGAATTTGTTGCTGTGTGTATGCTGTTGCTTCCTTTTGTTGCATAGTATTAGACTTTGTAATCTATGAAAGGCAAGCTTCCTTACCAATTATGTACCTTGTTTCTGATATAAGTGCCTTTGTTAGTGCTTTATTTCTTTGTTATTTGGGGTTCTCTGAAAACCATGTTGCTAAGAATGCCCCTCTCGAAGAAGCCCTTTTGAATGATGAATCTTTGGTGAGGAACAGTTCTAATCGCAATGGAAATTCGTCGAGTTACTGTGATGCTGGATTCTTTAGTTTTGTTACATTCTCTTGGTTGAGTCCATTGATATCTCTAGGCAATAAGAAGGCTTTAGATCTCGAGGATCTTCCTGTTCTTGGTATCAATGATAGTGCCTATGGGGCTTTTCCAAAACTTAGAGACAATCTTGAGTCACAGTGTGGGGGTGATGGGAAAGTAACCACTTTTAAGTTGGTTAAGTCATTGTTCTTGTCAACATGGCAGCTGATCTTACTGTCAGCCTTATATGCATTCCTGTACACTTGTGCTTCTTATGTTGGTCCATATTTGATTGATTTCCTTGTTCAATACCTCAATGGGCAGCAAGATTTTGAAAATGAAGGCTATGTGTTGGTATTGGCATTTGCTGTTGGCAAGCTTGTGGAGTGCCTTTCTCAACGGCACTGGATGTTCAGGTTCCAGCAGATTGGGGTTAGGATACAATCAATGTTGGTGGGGATTATCTATGCTAAAGGTTTGAAGCTTTCGTGTAAATCGAAGGATGTTCATAGTAGCGGGGAAATTGTGAACTTGTTGACTGTTGATGCTTCAAGGGTTGGTGAATTTTGTTGGTACATGCATGATCCATGGGTGGCTGTTTTGCAAGTTACTTTGGCCTTGTTGATTCTCTATAGGAGTGTTGGGCTTGCTTCGATTGCCGCTTTTGTTGCCACTGTAATTGTGATGTTGCTAAACCTGCCCGTGGCGTCATTGCAAGAAAAATACCAAGATAAGTTAATGGAGTTCAAAGACAAAAGAATGAAGTCAACTTCTGAGATCTTAAAGAATATGAGGATTCTAAAACTGCAAGCTTGGGAGATGAAGTTCTTAGCGAAGATCATTCAGCTTAGGAAGGCTGAGGAGATATGGCTAAAGAAATTTGTCATTGGTTCAGTGATTATTAGATTTCTCTTCTTTAATGCCCCAACTTTTGTTTCTGTGGTTACTTTTGGTACATGTGTTCTTATGGGTATACCACTTGAATCAGGGAAGATCTTATCTGCACTCGCAACTTTCCGAATTCTTCAAATTCCCATATATAGCCTCCCTGACACAATTTCAATGATAGCTCAAACTAAGGTCTCACTTGATAGGATCACATCATTTCTTTGTCTAGATGACTTGCAAGCCGATGCAGTGGAGAAAGTTCCATGGGGTAGTTCTGATTTAGCAGTTGAAGTTATAGATGGAAATTTCTCTTGGGATTCCTCTTCCTCTAATACTACTCTGGCGAACATAAATCTCAAAATTTTTCATGGCATGAGGGTTGCTATTTGTGGCACTGTTGGATCTGGCAAATCAAGTTTACTCTCTTGTGTAATTGGTGAATTACCGAAGCTATCTGGAACCACTAAAGTGTGTGGAACAAAGGCTTATGTTTCTCAATCGCCGTGGATACAGAGTGGTAAGATAGAAGATAATATACTATTTGGTAAAGAGATGGACAGGGGAAAGTATGAGAAGGTACTAGAGGCATGTTCCTTAACAAAAGACCTAGAGGTTCTATCATTTGGTGACCAGACTATTGTTGGTGAGAAAGGAATCAATTTGAGTGGTGGACAGAAGCAAAGATTACAGATAGCTCGCGCTCTTTACCAAGATGCTGATATATACCTGTTTGATGACCCTTTCAGTGCTGTGGATGCTCATACAGGATCTCATCTTTTTAAGGAGTGTATACTCGGCCTTTTACAAACAAAAACTGTGATATACATTACTCATCAGATAGAGTTTTTACCTGATGCTGACCTAATATTGGTCATGAAAGATGGAAGGATAACTCAGTCAGGAAAATACAATGATATTCTCAAGTCAGGCACTGATTTTATGGAACTTGTAGGGGCACATCAGGAAGCTTTGTCTTCGATTAAATCTTTACAGAGAAGGACTTCAAGTAAATCTTTAGAGAGAAGGCTTTCGAGTAAATCTTTTGAGAGAAGTCCCACGTCTAAGACATTAGGTCTCACCGTGGAGGACAGTGATTCACTAAGTTCTTTTGGAGAGCAAGACTTCGAAAATGTTGATGGCCAAAATGGTAAATCAGATGAAATGGTTGATGAAAAAGGCCAACTTGTTCAAGACGAAGAACGGGAAAAGGGTAGAGTTGAGTTTAAAGTCTACTGGAAATACATGACAACAGCATATGGAGGAGTTCTTGTACCTTTCATATTACTTTCACAAATACTTACTGTTGGTTTGACTGTTGCGAGCAATTATTGGATCACTTTGGCAACTCCAGTTTCTGCAACTGCAGAACCTGCTGTTGGAAGTGTTACACTTATGGCTGTCTATGCTGCTTTAGCAATTGGAAGTTCCTTTGGCAACCTTTTCAGAACAATGCTTACTGTGATAGCTGGATATGTGACTGCAACCATACTCTTCAATAAATTGCATATATGCCTTTTTCGAGCACCAATGTCATTTTTTGATGCTACCCCAAGTGGGCGAATCCTTAATAGAGCTTCAACAGACCAAAGTGCAGTAGATATTAACATTCCAAATCAATTATGGGCAGTTACCTACAATCTGTGTTTCATCTTGGGAAGTATTGCAGTGATGTCTCAAGCTGCATGGCAAGTGTTTATTGTATTTATTCCGGTGGTTGCAGCTTGCATTTGGTACCAGCAATACTATTCAGCATCGGCACGGGAATTGGCACGATTAGTTGGTATATGCCAAGCTCCGGTAATACAACATTTTTCTGAAACCATTTCCGGATCAACAACCATAAGAGCTTTTGAGCAAGAATCAAGATTCGGTGAAATAAGCATGAAATTGGCAGATAGATATTCCCTGCCAAAGCTGTTTTCTGCTTGTGCAATGGAATGGTTGTGTTTCAGATTGGATATTTTATCCTCCATCACGTTTGCGTTCTGTTTGATTTTCTTGGTATCTTTTCCAAATGCAATTGCTGTTCCTGGCATTGCGGGGTTGGCTGTGACATATGGGCTCAATTTAAATTCACAAGCGGTTAATGTAATCTGGTTTCTTTGCAATTTGGAGAACAAAATTATATCTGTAGAAAGAATTTTCCAATACACATCCATCCCAAGTGAACCTCCTCTTGTCATAGAACACAACCAACCTGATCCTTCATGGCCACCATTTGGGGAGGTTCATATCCAAGATCTACAGGTCAAGTATGCTCCGCACTTGCCACTTGTATTACGTGGACTTACTTGCACTTTCGCTGCTGGAACGAAAAATGGCATTGTGGGAAGAACTGGAAGTGGAAAATCAACTCTAGTGCAAACGCTTTTCCGGCTTGTAGAGCCAGTTGCTGGAAAAATATTGATTGATAGCATCAACATATCTTCAATTGGAATTCATGATTTAAGGTCCAAACTAAGCATTATTCCACAGGATCCAACAATGTTTGAAGGGACTATAAGAAACAACTTAGATCCACTGGAAGAATACACAGATGAACAAATTTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGAAGTAAGGAAGAAAGAAAAGAAACTGGACTCCATAGTTACTGAGAATGGAGAGAATTGGAGTATGGGCCAAAGGCAGTTGGTCTGCCTTGGCCGCGTGCTACTAAAGAAAAGCAAGATCTTAGTGCTTGACGAGGCTACAGCATCAGTTGATACAGCCACAGACAATATTATTCAGCAAACAGTTAAGCAGAATTTTTCAGATTGCACAGTGATTACAATTGCTCACAGAATAACATCAATCCTTGACAGTGACATGGTTCTGTTTCTTAACCAAGGACTTATTGAGGAGTATGATTCACCAAAAAAGTTGCTTAAGAACAAATCTTCTGCTCTTGCTCAACTAGTTGAAGAATACACACGAAGGTCAAACTCTGGTTTTGAAAGTTAA 4560 0.3976 MHLGVDDDGFLLQPIFTRYASASLNLILLIVLVVSWIWEKFHVNVNHRKSSERIRLGSTVNDNGRGFLFCKQGPICTLAALAICVFNLVLCLLSYFYLYKNDDGSSNEVIIAISDFAIRTLGWAVVCGYLQFRSSDSSGPCFSSFFLRICCCVYAVASFCCIVLDFVIYERQASLPIMYLVSDISAFVSALFLCYLGFSENHVAKNAPLEEALLNDESLVRNSSNRNGNSSSYCDAGFFSFVTFSWLSPLISLGNKKALDLEDLPVLGINDSAYGAFPKLRDNLESQCGGDGKVTTFKLVKSLFLSTWQLILLSALYAFLYTCASYVGPYLIDFLVQYLNGQQDFENEGYVLVLAFAVGKLVECLSQRHWMFRFQQIGVRIQSMLVGIIYAKGLKLSCKSKDVHSSGEIVNLLTVDASRVGEFCWYMHDPWVAVLQVTLALLILYRSVGLASIAAFVATVIVMLLNLPVASLQEKYQDKLMEFKDKRMKSTSEILKNMRILKLQAWEMKFLAKIIQLRKAEEIWLKKFVIGSVIIRFLFFNAPTFVSVVTFGTCVLMGIPLESGKILSALATFRILQIPIYSLPDTISMIAQTKVSLDRITSFLCLDDLQADAVEKVPWGSSDLAVEVIDGNFSWDSSSSNTTLANINLKIFHGMRVAICGTVGSGKSSLLSCVIGELPKLSGTTKVCGTKAYVSQSPWIQSGKIEDNILFGKEMDRGKYEKVLEACSLTKDLEVLSFGDQTIVGEKGINLSGGQKQRLQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECILGLLQTKTVIYITHQIEFLPDADLILVMKDGRITQSGKYNDILKSGTDFMELVGAHQEALSSIKSLQRRTSSKSLERRLSSKSFERSPTSKTLGLTVEDSDSLSSFGEQDFENVDGQNGKSDEMVDEKGQLVQDEEREKGRVEFKVYWKYMTTAYGGVLVPFILLSQILTVGLTVASNYWITLATPVSATAEPAVGSVTLMAVYAALAIGSSFGNLFRTMLTVIAGYVTATILFNKLHICLFRAPMSFFDATPSGRILNRASTDQSAVDINIPNQLWAVTYNLCFILGSIAVMSQAAWQVFIVFIPVVAACIWYQQYYSASARELARLVGICQAPVIQHFSETISGSTTIRAFEQESRFGEISMKLADRYSLPKLFSACAMEWLCFRLDILSSITFAFCLIFLVSFPNAIAVPGIAGLAVTYGLNLNSQAVNVIWFLCNLENKIISVERIFQYTSIPSEPPLVIEHNQPDPSWPPFGEVHIQDLQVKYAPHLPLVLRGLTCTFAAGTKNGIVGRTGSGKSTLVQTLFRLVEPVAGKILIDSINISSIGIHDLRSKLSIIPQDPTMFEGTIRNNLDPLEEYTDEQIWEALDMCQLGDEVRKKEKKLDSIVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQNFSDCTVITIAHRITSILDSDMVLFLNQGLIEEYDSPKKLLKNKSSALAQLVEEYTRRSNSGFES 1519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30989g00003 1519 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 956 1236 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30989g00003 1519 Gene3D ABC transporter type 1, transmembrane domain 917 1254 IPR036640 GO:0005524|GO:0016020
Stsc30989g00003 1519 Gene3D ABC transporter type 1, transmembrane domain 291 608 IPR036640 GO:0005524|GO:0016020
Stsc30989g00003 1519 CDD ABC_6TM_ABCC_D1 313 600 IPR044746 GO:0140359
Stsc30989g00003 1519 CDD ABCC_MRP_domain1 626 826 - -
Stsc30989g00003 1519 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 312 592 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30989g00003 1519 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 849 IPR003439 GO:0005524
Stsc30989g00003 1519 MobiDBLite consensus disorder prediction 879 908 - -
Stsc30989g00003 1519 CDD ABC_6TM_ABCC_D2 954 1248 IPR044726 GO:0140359
Stsc30989g00003 1519 ProSitePatterns ABC transporters family signature. 751 765 IPR017871 GO:0005524|GO:0016887
Stsc30989g00003 1519 Gene3D - 1256 1509 IPR027417 -
Stsc30989g00003 1519 MobiDBLite consensus disorder prediction 909 926 - -
Stsc30989g00003 1519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 623 848 IPR027417 -
Stsc30989g00003 1519 Pfam ABC transporter 644 778 IPR003439 GO:0005524
Stsc30989g00003 1519 CDD ABCC_MRP_domain2 1271 1491 - -
Stsc30989g00003 1519 FunFam ABC transporter C family member 10 295 608 - -
Stsc30989g00003 1519 SUPERFAMILY ABC transporter transmembrane region 302 604 IPR036640 GO:0005524|GO:0016020
Stsc30989g00003 1519 Gene3D - 610 875 IPR027417 -
Stsc30989g00003 1519 SMART AAA_5 653 826 IPR003593 GO:0016887
Stsc30989g00003 1519 SMART AAA_5 1299 1484 IPR003593 GO:0016887
Stsc30989g00003 1519 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 234 1509 - -
Stsc30989g00003 1519 FunFam ABC transporter C family member 5 611 858 - -
Stsc30989g00003 1519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1264 1499 IPR027417 -
Stsc30989g00003 1519 Pfam ABC transporter 1291 1438 IPR003439 GO:0005524
Stsc30989g00003 1519 Pfam ABC transporter transmembrane region 312 577 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30989g00003 1519 Pfam ABC transporter transmembrane region 956 1198 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30989g00003 1519 FunFam ABC transporter C family member 3 1256 1508 - -
Stsc30989g00003 1519 SUPERFAMILY ABC transporter transmembrane region 954 1253 IPR036640 GO:0005524|GO:0016020
Stsc30989g00003 1519 FunFam ABC transporter C family member 5 918 1254 - -
Stsc30989g00003 1519 MobiDBLite consensus disorder prediction 871 926 - -
Stsc30989g00003 1519 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1273 1507 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30989g00003 Stsc-Chr30989 9678 16466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30989g00003 626 887 Calmodulin-binding Proteins AT2G36910 28.322 3.81e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30989g00003 - K05666 gmx:106794105 2169.43