Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30989g00002 ATGAGTGGAAGTGAAAGTGGTGACATTGATTGGGAAAATGAACTGAGAAAGTTTCAGAATGCAATAGCCACAGGGACCAATTCCAAGAGAATCAAAGCTATGGCCACACTTGCTCGTAACTCCAAACACACCCCTGAACATGTATTGGCTCGCACCATACCCTTTTTCCTGGAGATCCTTCGCCACAATAGCCATCCAAATTCTTCGCTTCACATGGCTTCAGCTTATTGCTTGAAGTGCATAGCTTGCAGGAGTGACGAGTTGGTTACTCAAATGAGTGCAAACGGCACTGCGCAATCGCTTATGAGTTTGTTGCCTCATTCTGATGGGATGTTTCTGAAAGTCCTTGTGAAGTGCTTGTTGGTTGTGGTTGGTCTTTGTAACACAAGTAGGGCTGTTGTTGCCACTGGTGGTGGGTTAGGTATCATTGTGAATAAGTTGAATTCTTACGAGGATGGCGAAATTCGACGGTATTTGTTGGAGATTCTGAGCTTGTTGGCGCTGCAGCGCAATGTTAGGAGGGAAATTGTTCACCTTGATGCTCTTCATTATGTTGTGGAGGCTGTTGGTGTTGGTAGTATGGTCTCCAGAGAGAGGGCATGCCAAGCAATTGGGATGTTTGGGGTTACAAGAGAAGGTAGGCGAGCTGTCGTTGAATTGGGTGCAATATTACCAGTTGTGGAGCTATTTCGCTGCGGAGATCACACCACAAAGCTTGTGGCTGGAAATACTCTTGGTGTGATATCTGCTTATATTGATTGTATTAGGTCAATTGCTCGAGCTGGGGCTATCCCCCTTTATTCTGAGCTTCTTGAAGGGGGTGATCCTTCTGGTAAGGATATTGCCGAGGATGCATTTTGTGTGTTGGCTGTTGATGAGGCTAATGCCATTGAAATCTTTGAAAACTTAGTAAGGATTTTGAGAGATGGTGATAATGAGGCGAAGGCTGCAGCTGCTAATGTGGTGTGGGATCTATCTACTTACAGTTACTCAACACCAGTGGTGCGAGATTCAGGTGTGATTCCGATACTTGTTGATCTTTTGGGGAGTGGAAGTAATGAGGTGAAGGAGAATGTTTCTGGTGCAATTTCTCAGCTGAGCTATGATAGGGAGAATAGAATTGCACTTTCCGATGCTGGGGTGGTTCCAATCTTCATCGACTTGTTGCATGATGATTTGGAGGAACTAAGGGATAATGCAGCTGAGGCTCTTGTCAATTTTTATGAAGATCCATTGTACCATGATAGTGTATCTCATATAATTGATATTCCTTCATTCAGAATCATGCTGAATCGGCTGGTTCACCTTCGTGAATCGAATGAGCGTGCTCTTGTACAAAGAATGGACATTGATCTTCCCGCGTGGAATTCAGATCGAATAACCTAA 1386 0.4437 MSGSESGDIDWENELRKFQNAIATGTNSKRIKAMATLARNSKHTPEHVLARTIPFFLEILRHNSHPNSSLHMASAYCLKCIACRSDELVTQMSANGTAQSLMSLLPHSDGMFLKVLVKCLLVVVGLCNTSRAVVATGGGLGIIVNKLNSYEDGEIRRYLLEILSLLALQRNVRREIVHLDALHYVVEAVGVGSMVSRERACQAIGMFGVTREGRRAVVELGAILPVVELFRCGDHTTKLVAGNTLGVISAYIDCIRSIARAGAIPLYSELLEGGDPSGKDIAEDAFCVLAVDEANAIEIFENLVRILRDGDNEAKAAAANVVWDLSTYSYSTPVVRDSGVIPILVDLLGSGSNEVKENVSGAISQLSYDRENRIALSDAGVVPIFIDLLHDDLEELRDNAAEALVNFYEDPLYHDSVSHIIDIPSFRIMLNRLVHLRESNERALVQRMDIDLPAWNSDRIT 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30989g00002 461 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 303 415 - -
Stsc30989g00002 461 ProSiteProfiles HEAT repeat profile. 381 407 IPR021133 -
Stsc30989g00002 461 SUPERFAMILY ARM repeat 52 410 IPR016024 -
Stsc30989g00002 461 Gene3D - 17 329 IPR011989 -
Stsc30989g00002 461 Gene3D - 330 425 IPR011989 -
Stsc30989g00002 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 339 381 IPR000225 GO:0005515
Stsc30989g00002 461 Pfam Armadillo/beta-catenin-like repeat 334 367 IPR000225 GO:0005515
Stsc30989g00002 461 Pfam Armadillo/beta-catenin-like repeat 370 406 IPR000225 GO:0005515
Stsc30989g00002 461 SMART arm_5 369 409 IPR000225 GO:0005515
Stsc30989g00002 461 SMART arm_5 328 368 IPR000225 GO:0005515
Stsc30989g00002 461 SMART arm_5 210 250 IPR000225 GO:0005515
Stsc30989g00002 461 SMART arm_5 284 327 IPR000225 GO:0005515
Stsc30989g00002 461 Coils Coil 386 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30989g00002 Stsc-Chr30989 4956 7148 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30989g00002 303 431 U-box Gene Family AT2G23140 26.357 3.39e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30989g00002 - - gmx:100819735 545.428