Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30989g00001 ATGGCCACACTTGCTCGTAACTCCAAACACACCCCTGAACATGTATTGGCTCGCACCATACCCTTTTTCCTGGAGATCCTTCGCCACAATAGCCATCCAAATTCTTCGCTTCACATGGCTTCAGCTTATTGCTTGAAGTGCATAGCTTGCAGGAGTGACGAGTTGGTTACTCAAATGAGTGCAAACGGCACTGCGCAATCGCTTATGAGTTTGTTGCCTCATTCTGATGGGATGTTTCTGAAAGTCCTTGTGAAGTGCTTGTTGGTTGTGGTTGGTCTTTGTAACACAAGTAGGGCTGTTGTTGCCACTGGTGGTGGGTTAGGTATCATTGTGAATAAGTTGAATTCTTACGAGGATGGCGAAATTCGACGGTATTTGTTGGAGATTCTGAGCTTGTTGGCGCTGCAGCGCAATGTTAGGAGGGAAATTGTTCACCTTGATGCTCTTCATTATGTTGTGGAGGCTGTTGGTGTTGGTAGTATGGTCTCCAGAGAGAGGGCATGCCAAGCAATTGGGATGTTTGGGGTTACAAGAGAAGGTAGGCGAGCTGTCGTTGAATTGGGTGCAATATTACCAGTTGTGGAGCTATTTCGCTGCGGAGATCACACCACAAAGCTTGTGGCTGGAAATACTCTTGGTGTGATATCTGCTTATATTGATTGTATTAGGTCAATTGCTCGAGCTGGGGCTATCCCCCTTTATTCTGAGCTTCTTGAAGGGGGTGATCCTTCTGGTAAGGATATTGCCGAGGATGCATTTTGTGTGTTGGCTGTTGATGAGGCTAATGCCATTGAAATCTTTGAAAACTTAGTAAGGATTTTGAGAGATGGTGATAATGAGGCGAAGGCTGCAGCTGCTAATGTGGTGTGGGATCTATCTACTTACAGTTACTCAACACCAGTGGTGCGAGATTCAGGTGTGATTCCGATACTTGTTGATCTTTTGGGGAGTGGAAGTAATGAGGTGAAGGAGAATGTTTCTGGTGCAATTTCTCAGCTGAGCTATGATAGGGAGAATAGAATTGCACTTTCCGATGCTGGGGTGGTTCCAATCTTCATCGACTTGTTGCATGATGATTTGGAGGAACTAAGGGATAATGCAGCTGAGGCTCTTGTCAATTTTTATGAAGATCCATTGTACCATGATAGTGTATCTCATATAATTGATATTCCTTCATTCAGAATCATGCTGAATCGGCTGGTTCACCTTCGTGAATCGAATGAGCGTGCTCTTGTACAAAGAATGGACATTGATCTTCCCGCGTGGAATTCAGATCGAATAACCTAA 1287 0.4468 MATLARNSKHTPEHVLARTIPFFLEILRHNSHPNSSLHMASAYCLKCIACRSDELVTQMSANGTAQSLMSLLPHSDGMFLKVLVKCLLVVVGLCNTSRAVVATGGGLGIIVNKLNSYEDGEIRRYLLEILSLLALQRNVRREIVHLDALHYVVEAVGVGSMVSRERACQAIGMFGVTREGRRAVVELGAILPVVELFRCGDHTTKLVAGNTLGVISAYIDCIRSIARAGAIPLYSELLEGGDPSGKDIAEDAFCVLAVDEANAIEIFENLVRILRDGDNEAKAAAANVVWDLSTYSYSTPVVRDSGVIPILVDLLGSGSNEVKENVSGAISQLSYDRENRIALSDAGVVPIFIDLLHDDLEELRDNAAEALVNFYEDPLYHDSVSHIIDIPSFRIMLNRLVHLRESNERALVQRMDIDLPAWNSDRIT 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30989g00001 428 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 269 382 - -
Stsc30989g00001 428 Coils Coil 353 373 - -
Stsc30989g00001 428 SMART arm_5 336 376 IPR000225 GO:0005515
Stsc30989g00001 428 SMART arm_5 177 217 IPR000225 GO:0005515
Stsc30989g00001 428 SMART arm_5 295 335 IPR000225 GO:0005515
Stsc30989g00001 428 SMART arm_5 251 294 IPR000225 GO:0005515
Stsc30989g00001 428 Gene3D - 298 389 IPR011989 -
Stsc30989g00001 428 ProSiteProfiles HEAT repeat profile. 348 374 IPR021133 -
Stsc30989g00001 428 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 306 348 IPR000225 GO:0005515
Stsc30989g00001 428 SUPERFAMILY ARM repeat 19 377 IPR016024 -
Stsc30989g00001 428 Pfam Armadillo/beta-catenin-like repeat 337 373 IPR000225 GO:0005515
Stsc30989g00001 428 Pfam Armadillo/beta-catenin-like repeat 301 334 IPR000225 GO:0005515
Stsc30989g00001 428 Gene3D - 1 297 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30989g00001 Stsc-Chr30989 4956 7149 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30989g00001 270 398 U-box Gene Family AT2G23140 26.357 3.58e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30989g00001 - - gmx:100819735 512.301