Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30982g00001 GAGGGAAACCTAACAAAAAACAACATGCCGCCTATGAGCACGAAGGAGGACACAAGTGGGGAATGGACAATGCAGAGACCAAGAAGAGCTAGGAGACAACAGTATCTGAAGCCAAGACAGGCTACTCTGAAGGAAGGGAGGGATGAGGTCAGCAGAGGAACAAGAAGGGACTGGGAGACGATGGAGAGGAACTCGCACTCTGTTTTTGTCGACAACTTGCCGATGGACATAGCCAAGGGACTTCTTTACAAAATCTTTGGATGGGTGGGAGGTGTGACTGATGTGTACGTGTCAAGGAAAACAAGGAAAGGAACGAGCTCGGCTTTTGCATTTGTACAGTTTGACGCCAAGGGGGGGGGGGCTGATAGAGCAGTACAGAAGTTGAACGGTGTAAGCATAGGAACAAGGAGAATGGTGGTCAAAGTGGCAAGCTTCGGTCGAAATAACTACACCCGGTTGGAAAGGATCAGGGAGTACTGGGGCACGAGGATGAGGAAGGAGGGTATAGACAACATGAAGATGAGGCAGGAAGGGAGAAAACGCGAAACAACAGAGGAGGAAGTGGTAAGGAAGAAGGAGAATCGGAAAAGTGGTAAACCAATTAAAGAGCCACCTGAGTTCCGGCGAGCAATGGAACGGGTGATGGACGGATGGAGGGGGCAGGGAGGGGGTGAAGAAAGCGAGACAGGGAGGCTCAAGATTCTAATATCTTATGAGACGGAGGCAGGCGCGAGTATTGCAGAGGGAAAGGAAGGGGGGCCGCCGAGACTGGTGGTGGTGGAAGGCCTCGGCAAGAGATGGGACCCATTGGTGCAGGAGTTAATTTCGAAAAATACGGGGGAGGGAGAAATGAGCGTTGATCATTATTATCTTGGTGGCGAGGTTCTTCTTTTCGAGAAGAGTCCAATTATTACGGCGTGCATGGAGTGCATGGGTAACAGTGAAGTGATAGAACGTTATAAGGGAGGTGCTAAAGAAAGTGATAAGCGGGTTAGAACAAGTTCGGGTCAGGTCCAAAAACAAGTCATAGGCCCAGAACAGACACTAAGGGAGGAGAGGAGAGTTCTTTGTAAAAAGGGTTATTGGGCCAAAATGGGTGAGGTGATACAAATTCAGTCAGCCCAATTGTAA 1131 0.496 EGNLTKNNMPPMSTKEDTSGEWTMQRPRRARRQQYLKPRQATLKEGRDEVSRGTRRDWETMERNSHSVFVDNLPMDIAKGLLYKIFGWVGGVTDVYVSRKTRKGTSSAFAFVQFDAKGGGADRAVQKLNGVSIGTRRMVVKVASFGRNNYTRLERIREYWGTRMRKEGIDNMKMRQEGRKRETTEEEVVRKKENRKSGKPIKEPPEFRRAMERVMDGWRGQGGGEESETGRLKILISYETEAGASIAEGKEGGPPRLVVVEGLGKRWDPLVQELISKNTGEGEMSVDHYYLGGEVLLFEKSPIITACMECMGNSEVIERYKGGAKESDKRVRTSSGQVQKQVIGPEQTLREERRVLCKKGYWAKMGEVIQIQSAQL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30982g00001 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 138 IPR000504 GO:0003723
Stsc30982g00001 376 MobiDBLite consensus disorder prediction 1 20 - -
Stsc30982g00001 376 MobiDBLite consensus disorder prediction 1 54 - -
Stsc30982g00001 376 SUPERFAMILY RNA-binding domain, RBD 58 170 IPR035979 GO:0003676
Stsc30982g00001 376 CDD RRM_SF 68 141 - -
Stsc30982g00001 376 PANTHER RNA-BINDING MOTIF PROTEIN 14B 66 173 - -
Stsc30982g00001 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 145 IPR000504 GO:0003723
Stsc30982g00001 376 SMART rrm1_1 67 141 IPR000504 GO:0003723
Stsc30982g00001 376 Gene3D - 29 147 IPR012677 -
Stsc30982g00001 376 MobiDBLite consensus disorder prediction 173 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30982g00001 Stsc-Chr30982 5886 7016 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30982g00001 56 140 Eukaryotic Initiation Factors Gene Family AT1G22760 36.471 4.75e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30982g00001 K12900 - ahf:112794598 146.747