Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30968g00002 ATGCATAAACTCCACACACTCTTGCTCCTCATTTTAGCGATAACCGTCGATGGCAGTTCCACATCGGAAGTAAACACAATGCTTCCATCCGACGCCATTTCACTTCTCTCCTTCAAGTCAAAAGCAGACCTCGACAACAAGCTCCTATACGCCTTAAACGAGCGCTACGACTACTGCGAATGGCAAGGAGTGAAGTGCGCACAAGGCAGAGTGGTTCGCTTCGTCGTCCAAGGCTTCTCCCTCCGAGGCACCTTCGCCGCCGACACAGTCACCCGCCTCGACCAGCTCCGCGTCCTCAGCCTCCGCAACAACTCACTCTCCGGCACCATCCCCGACCTCTCCCCTCTTAAAAACCTCAAGTCTCTCTTCCTCGACCGTAACCACTTTTCCGGAACCTTCCCTCTCTCGGTTCTCACGCTTCACCGGCTAGTTACACTCTCACTCGCGCATAACGACCTCTCCGGTCCGATTCCGGTTCGGCTCAACTCGCTAGACCGGTTAATCTCCCTCCGGTTGGATTCTAACCACTTTAACGGAACTCTGCCTGCTCTCAATTTATCCTTTCTTGAAACGCTTGATGTTTCGAATAACTACCTTACCGGTCCTGTGCCTGTTACGCCCACGCTATCGAAGTTTGGTGCGACGTCGTTTTCAGGAAACGATGAGCTCTGCGGGGAGATTATCCACAAGCCATGCGATCGGCATTCTAGGTTCTTCGGTGGAAGTGGCGGCGGTGGCTCTTCTGCTGCCACGTCCTCCTCCGCGCCGCTAGGGCAGAGCGAGCAGGGGATCGTGGTGGTTCATTCGCCGATTAAGGAAAGGAAGAAGCACCAGAGTAGTGGATTGGTTCTCGGAATCTCCGTCGCGGTCGCGGTTCTCGTCGGCGCCGGGATGGCGGTGGTTGTGGTGGTGAGGAAGAAGAATAAAAGCAAGCAAGGGGGAAGGCTTGGGGAAGAAATCGAAATCGAGAGGGAGAAAACGACGGCTTTGGAGGTTGAAACGGGGGAAAATTCAAATAACTCAGCGCAGTTGGTGAGGGAAAGGGAAAACGAAAACGACGTCGTTTCGATGATGAAGGTGAAGAGGATAGAGGAGATAGAGAGGGCGCATAAAAGTGGGAAGTTAATATTCTGCTACGGTGAGGCGCAACCGTACACGCTGGAGCAGTTGATGAGGGCGTCGGCGGAGCTTCTTGGGAGGGGGAGCCTGGGGGCCACGTACAAGGCGGTTCTTGATTCGCGGCTGATACTGACGGTTAAGAGAATGGACGCCGGGAAGACAGCGGCGACGAGCGGAGAGGTGTTTGAGAGGCACATGGAGATGGTGGGGGCACTTCGGCACCCGAATTTGGTTCCGGTGAGGGCTTATTTTCAGGCAAAGGGGGAGAGGCTTGTCATCTATGATTATCAGCCAAATGGAAGCTTATACAATCTTGTTCATGTCTGGGATTGA 1452 0.5406 MHKLHTLLLLILAITVDGSSTSEVNTMLPSDAISLLSFKSKADLDNKLLYALNERYDYCEWQGVKCAQGRVVRFVVQGFSLRGTFAADTVTRLDQLRVLSLRNNSLSGTIPDLSPLKNLKSLFLDRNHFSGTFPLSVLTLHRLVTLSLAHNDLSGPIPVRLNSLDRLISLRLDSNHFNGTLPALNLSFLETLDVSNNYLTGPVPVTPTLSKFGATSFSGNDELCGEIIHKPCDRHSRFFGGSGGGGSSAATSSSAPLGQSEQGIVVVHSPIKERKKHQSSGLVLGISVAVAVLVGAGMAVVVVVRKKNKSKQGGRLGEEIEIEREKTTALEVETGENSNNSAQLVRERENENDVVSMMKVKRIEEIERAHKSGKLIFCYGEAQPYTLEQLMRASAELLGRGSLGATYKAVLDSRLILTVKRMDAGKTAATSGEVFERHMEMVGALRHPNLVPVRAYFQAKGERLVIYDYQPNGSLYNLVHVWD 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30968g00002 483 ProSiteProfiles Leucine-rich repeat profile. 95 117 IPR001611 GO:0005515
Stsc30968g00002 483 Gene3D Ribonuclease Inhibitor 29 183 IPR032675 -
Stsc30968g00002 483 SUPERFAMILY L domain-like 29 225 - -
Stsc30968g00002 483 Gene3D Phosphorylase Kinase; domain 1 343 469 - -
Stsc30968g00002 483 Pfam Protein tyrosine and serine/threonine kinase 396 480 IPR001245 GO:0004672|GO:0006468
Stsc30968g00002 483 SUPERFAMILY Protein kinase-like (PK-like) 396 480 IPR011009 -
Stsc30968g00002 483 MobiDBLite consensus disorder prediction 245 259 - -
Stsc30968g00002 483 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 7 480 IPR046959 -
Stsc30968g00002 483 MobiDBLite consensus disorder prediction 239 259 - -
Stsc30968g00002 483 FunFam Leucine-rich repeat receptor-like protein kinase 142 234 - -
Stsc30968g00002 483 Gene3D Ribonuclease Inhibitor 184 232 IPR032675 -
Stsc30968g00002 483 FunFam Probable inactive receptor kinase At5g67200 30 140 - -
Stsc30968g00002 483 ProSiteProfiles Protein kinase domain profile. 392 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30968g00002 Stsc-Chr30968 5049 8988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30968g00002 20 480 Receptor kinase-like Gene Family AT3G50230 49.471 2.28e-140 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc30968g00002 PK_Tyr_Ser-Thr 3.6e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30968g00002 - - qsa:O6P43_033846 494.582