Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30968g00001 ATGCATAAACTCCACACACTCTTGCTCCTCATTTTAGCGATAACCGTCGATGGCAGTTCCACATCGGAAGTAAACACAATGCTTCCATCCGACGCCATTTCACTTCTCTCCTTCAAGTCAAAAGCAGACCTCGACAACAAGCTCCTATACGCCTTAAACGAGCGCTACGACTACTGCGAATGGCAAGGAGTGAAGTGCGCACAAGGCAGAGTGGTTCGCTTCGTCGTCCAAGGCTTCTCCCTCCGAGGCACCTTCGCCGCCGACACAGTCACCCGCCTCGACCAGCTCCGCGTCCTCAGCCTCCGCAACAACTCACTCTCCGGCACCATCCCCGACCTCTCCCCTCTTAAAAACCTCAAGTCTCTCTTCCTCGACCGTAACCACTTTTCCGGAACCTTCCCTCTCTCGGTTCTCACGCTTCACCGGCTAGTTACACTCTCACTCGCGCATAACGACCTCTCCGGTCCGATTCCGGTTCGGCTCAACTCGCTAGACCGGTTAATCTCCCTCCGGTTGGATTCTAACCACTTTAACGGAACTCTGCCTGCTCTCAATTTATCCTTTCTTGAAACGCTTGATGTTTCGAATAACTACCTTACCGGTCCTGTGCCTGTTACGCCCACGCTATCGAAGTTTGGTGCGACGTCGTTTTCAGGAAACGATGAGCTCTGCGGGGAGATTATCCACAAGCCATGCGATCGGCATTCTAGGTTCTTCGGTGGAAGTGGCGGCGGTGGCTCTTCTGCTGCCACGTCCTCCTCCGCGCCGCTAGGGCAGAGCGAGCAGGGGATCGTGGTGGTTCATTCGCCGATTAAGGAAAGGAAGAAGCACCAGAGTAGTGGATTGGTTCTCGGAATCTCCGTCGCGGTCGCGGTTCTCGTCGGCGCCGGGATGGCGGTGGTTGTGGTGGTGAGGAAGAAGAATAAAAGCAAGCAAGGGGGAAGGCTTGGGGAAGAAATCGAAATCGAGAGGGAGAAAACGACGGCTTTGGAGGTTGAAACGGGGGAAAATTCAAATAACTCAGCGCAGTTGGTGAGGGAAAGGGAAAACGAAAACGACGTCGTTTCGATGATGAAGGTGAAGAGGATAGAGGAGATAGAGAGGGCGCATAAAAGTGGGAAGTTAATATTCTGCTACGGTGAGGCGCAACCGTACACGCTGGAGCAGTTGATGAGGGCGTCGGCGGAGCTTCTTGGGAGGGGGAGCCTGGGGGCCACGTACAAGGCGGTTCTTGATTCGCGGCTGATACTGACGGTTAAGAGAATGGACGCCGGGAAGACAGCGGCGACGAGCGGAGAGGTGTTTGAGAGGCACATGGAGATGGTGGGGGCACTTCGGCACCCGAATTTGGTTCCGGTGAGGGCTTATTTTCAGGCAAAGGGGGAGAGGCTTGTCATCTATGATTATCAGCCAAATGGAAGCTTATACAATCTTGTTCATGGCTCAAGATCCGCATGGGCAAAGCCCCTCCATTGGACATCATGCTTGAAAATAGCAGAAGATATAGTTCATGGACTTGCTTATGTACATCAAGCTTCATCCTTAATTCATGGCAACCTAAAATCCTCCAATGTCCTTCTTGGAGCAGACTTTGAAGCATGTATTACAGACTATGGTTTGTCCTTTCTCGCCGATTCTTCTCCCACCGAAGATGCCGATTCTACAGCCTATAAACCACCAGAAGTCCGAAAGTCTAGCCACAGGGCATCTTCCAAGTCTGATGTGTATTCTTTTGGTGTGCTTCTGCTAGAGCTTTTGACCGGTAAACACCCTTCTCAACACCCTGTCCTTGTGCCAACGGATTTGCATGACTGGGTTAGAGCAATGAGGGACGACGATGGGAGTGAAGACAACCGGCTCGAAATGCTCACAGAGGTTGCCAGTATTTGCAGTGCAACCTCACCGGAGCAGAGACCGGCAATGTGGCAAGTCCTGAAGATGATACAGGAAATAAAGGAGACAGCAACATGA 1971 0.5226 MHKLHTLLLLILAITVDGSSTSEVNTMLPSDAISLLSFKSKADLDNKLLYALNERYDYCEWQGVKCAQGRVVRFVVQGFSLRGTFAADTVTRLDQLRVLSLRNNSLSGTIPDLSPLKNLKSLFLDRNHFSGTFPLSVLTLHRLVTLSLAHNDLSGPIPVRLNSLDRLISLRLDSNHFNGTLPALNLSFLETLDVSNNYLTGPVPVTPTLSKFGATSFSGNDELCGEIIHKPCDRHSRFFGGSGGGGSSAATSSSAPLGQSEQGIVVVHSPIKERKKHQSSGLVLGISVAVAVLVGAGMAVVVVVRKKNKSKQGGRLGEEIEIEREKTTALEVETGENSNNSAQLVRERENENDVVSMMKVKRIEEIERAHKSGKLIFCYGEAQPYTLEQLMRASAELLGRGSLGATYKAVLDSRLILTVKRMDAGKTAATSGEVFERHMEMVGALRHPNLVPVRAYFQAKGERLVIYDYQPNGSLYNLVHGSRSAWAKPLHWTSCLKIAEDIVHGLAYVHQASSLIHGNLKSSNVLLGADFEACITDYGLSFLADSSPTEDADSTAYKPPEVRKSSHRASSKSDVYSFGVLLLELLTGKHPSQHPVLVPTDLHDWVRAMRDDDGSEDNRLEMLTEVASICSATSPEQRPAMWQVLKMIQEIKETAT 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30968g00001 656 Gene3D Ribonuclease Inhibitor 29 183 IPR032675 -
Stsc30968g00001 656 Pfam Protein kinase domain 395 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30968g00001 656 ProSiteProfiles Protein kinase domain profile. 392 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30968g00001 656 ProSiteProfiles Leucine-rich repeat profile. 95 117 IPR001611 GO:0005515
Stsc30968g00001 656 Gene3D Phosphorylase Kinase; domain 1 354 469 - -
Stsc30968g00001 656 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 7 653 IPR046959 -
Stsc30968g00001 656 MobiDBLite consensus disorder prediction 546 568 - -
Stsc30968g00001 656 SUPERFAMILY L domain-like 29 225 - -
Stsc30968g00001 656 Gene3D Transferase(Phosphotransferase) domain 1 471 656 - -
Stsc30968g00001 656 SUPERFAMILY Protein kinase-like (PK-like) 396 651 IPR011009 -
Stsc30968g00001 656 Gene3D Ribonuclease Inhibitor 184 232 IPR032675 -
Stsc30968g00001 656 MobiDBLite consensus disorder prediction 245 259 - -
Stsc30968g00001 656 MobiDBLite consensus disorder prediction 239 259 - -
Stsc30968g00001 656 FunFam Probable inactive receptor kinase At5g67200 30 140 - -
Stsc30968g00001 656 FunFam Leucine-rich repeat receptor-like protein kinase 142 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30968g00001 Stsc-Chr30968 4950 8988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30968g00001 20 652 Receptor kinase-like Gene Family AT3G50230 53.313 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc30968g00001 Pkinase 8.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30968g00001 - - gmx:100783086 785.023