Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30963g00002 ATGGTGATGGAAGATCATGGTGCTGGTGCTGGTGCTGGTGCTGCATCATTTGATGATGCTAGTTCAACAGAAGAATGGTTGCTGCATGCACAGAAGCTTGTTCCTGCTGCAATGTCTAAGGCTAAAGAGGTTAAAGGCTTCACAGTTAAATGGAAGATGATCATCTCAAAATTGGAGCAAATTCCGTCGCGTTTATCGGATTTATCAAGCCACCCTTGCTTCTCCAAGAATACTCTCTGCAAGGAGCAATTGCAATCAGTTTCCAAGTCACTCGAAGAGGCGATCGAATTGGCCGAGCTTTGTTTGAAGGAGAAGTATGAAGGTAAGCTTCGGATGCAGAGTGATCTCGACGCCTTAGCCGGGAAACTCGATTTGAATTTGAAAGATTGCAGCTTGCTTATCAAAACTGGTGTTCTAGGAGAGGCTACTCTTCCTTTAATGGTGTCTGTGAAAGACTCTGATGTAGATTTTGCATCCATTAAGGAATTACTTGCACGGCTTCAGATAGGTAACTTGGAAGCCAAGCAAAGAGCATTGGAGAAGCTCTATGATGAGATCAAAGAAGATGAGAAGAATGTTTTGGCTGTTCTTGGAAGAAGCAATGTTGCTGCATTGGTTCAATTGCTTACAGCAACATCTCCAAGGATTAGGGAAAAGGCTGCTACTCTTATATGTATTCTTGTGGAATCCGGTAGTTGCGAAAATTGGCTGGTTTCTGAAGGTGTTCTGCCACCTCTAATTCGGCTCGTTGAATCCGGCAGTGCTTTGGGGAAAGAGAAGGCAACAATTTCTCTTCAGAGGCTGTCAATGTCGGCCGAAACCACCCGTGCAATTGTTGGACACGGTGGCGTTCGGCCGTTAATTGAGCTCTGCCAAACAGGGGACTCTGTTTCTCAGGCTGCAGCTGCTTGCGCTTTGAAGAATGTGTCGTCCGTGCCGGAGGTTAGGCAGGTTTTGGCTGAAGAAGGCATTGTGAAAGTGATGATTGAGCTTCTTAGCTGTGGAATTTTGTTGGGATCGAAAGAGTATGCGGCCGAGTGCTTGCAGAATCTAACCGCGAGCAACGAGAATCTAAGAAGATCTGTCATAACAGAAGGTGGATTTAGCAATCTCCTGGCCTATCTAGATGGTCCTCTTCCTCAAGAATCCGCGGTCGCAGCCTTAAGGAATTTGGTTGGTTCTGTTTCTGAGGATGTTCTAGATTCCCTTGGCTTGCTTCCTAGATTGGTTCATGTTCTTAAGTCAGGTTCCTTGGGTGCCAAGCAAGCCGCAGCATCGGTCATTTGCCGGATTTGTGGCCCGATTGAGATGAAGAAAATAATCGGCGAAGCCGGCTGCATACCTCTTCTGATCAACTTGCTTGAGGCTAAAGCAAACAATGCTAGAGAAGTTGCTGCACAGGCAATTTCGAGCTTGATGGTTCTGTCGGCGAATCGAAGAGAGGTTAAGAAGGATGATAAGATTGTTGTGCCGAGTTTGGTTCAGTTGCTTGATCCAAATCCACAGAACACTGCAAAGAAATATGCAGTTTCATGCCTTGCATCACTGTCTTCTTGCAAGAAATGTAAGAAGCTTATGATTTCTTATGGAGCAATAGGGTATCTCAAGAAGCTTAGTGAGATGGAGATTCCTGGATCTAAGAAGCTTCTAGAGAGATTGGAAAGAGGAAAACTCAGAAGCTTGTTTAGCAGAAAATAA 1698 0.4517 MVMEDHGAGAGAGAASFDDASSTEEWLLHAQKLVPAAMSKAKEVKGFTVKWKMIISKLEQIPSRLSDLSSHPCFSKNTLCKEQLQSVSKSLEEAIELAELCLKEKYEGKLRMQSDLDALAGKLDLNLKDCSLLIKTGVLGEATLPLMVSVKDSDVDFASIKELLARLQIGNLEAKQRALEKLYDEIKEDEKNVLAVLGRSNVAALVQLLTATSPRIREKAATLICILVESGSCENWLVSEGVLPPLIRLVESGSALGKEKATISLQRLSMSAETTRAIVGHGGVRPLIELCQTGDSVSQAAAACALKNVSSVPEVRQVLAEEGIVKVMIELLSCGILLGSKEYAAECLQNLTASNENLRRSVITEGGFSNLLAYLDGPLPQESAVAALRNLVGSVSEDVLDSLGLLPRLVHVLKSGSLGAKQAAASVICRICGPIEMKKIIGEAGCIPLLINLLEAKANNAREVAAQAISSLMVLSANRREVKKDDKIVVPSLVQLLDPNPQNTAKKYAVSCLASLSSCKKCKKLMISYGAIGYLKKLSEMEIPGSKKLLERLERGKLRSLFSRK 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30963g00002 565 Gene3D - 158 391 IPR011989 -
Stsc30963g00002 565 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 19 563 - -
Stsc30963g00002 565 SUPERFAMILY ARM repeat 158 542 IPR016024 -
Stsc30963g00002 565 Coils Coil 169 192 - -
Stsc30963g00002 565 Gene3D - 395 544 IPR011989 -
Stsc30963g00002 565 Pfam Armadillo/beta-catenin-like repeat 436 472 IPR000225 GO:0005515
Stsc30963g00002 565 Pfam Armadillo/beta-catenin-like repeat 273 310 IPR000225 GO:0005515
Stsc30963g00002 565 SMART arm_5 354 393 IPR000225 GO:0005515
Stsc30963g00002 565 SMART arm_5 396 433 IPR000225 GO:0005515
Stsc30963g00002 565 SMART arm_5 271 311 IPR000225 GO:0005515
Stsc30963g00002 565 SMART arm_5 312 353 IPR000225 GO:0005515
Stsc30963g00002 565 SMART arm_5 434 474 IPR000225 GO:0005515
Stsc30963g00002 565 SMART arm_5 475 518 IPR000225 GO:0005515
Stsc30963g00002 565 SMART arm_5 189 229 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30963g00002 Stsc-Chr30963 9417 12394 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30963g00002 210 483 U-box Gene Family AT3G54790 28.315 3.88e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30963g00002 - - gmx:100809488 848.966