Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30963g00001 ATGAGAAGGTTCATTGGTGTGAGGCAAAGGCCTTCAGGAAGATGGGTGGCTGAGATCAAAGACTCTTCGCAACATGTGAGGTTATGGCTTGGGACCTATGACACACCAGAGGAAGCAGCAAGGGCCTATGACGAAGCGGCACGTGTCCTACGAGGCGAAAATGCAAGAACAAACTTTGCATTGTTTGGTTCTAATATAGGCGGGAGTTCAAACGACTTATTATCCAAATCTGATGAAAAAATAGGATTGAACTTCGCATCGTTAAAAGCGAAGCTCAGTAAGAATATTCAGAACATTATGGCAAGAGCAAGCGATAATAAAAACAACAGCACCAAATTCTCGTCGTCAAGGAGTAGGGTGAGTGATCATTTCACCTTTGCTAGCATATTCAAAAGAAGAAATTCTTACCAACAATACCCTCATCATGAAATGCCTAGTCCAATAATTGATATGAAGAACATTGATAAAGTTGTGCAACCTAGTATCATTGTTCCCCCTTTGGACAATGATCTCAGCCACAACAATAATAATCATCATAATGGTTCACCATCATCATGGGAAAATTCCAGTGTTTCTGATTGTAGTAGTTGTGATTGGTTTGGATCATCAGATTTTGCAGATTTTAGTGTTGGTGATCAAGGGTACTTGGATCAATTATTGGGGTGGGTTGAAAGTTCAAACCTTTGTTCAAGTGGGGTTGGTAGTGATTTTGATGAAGATGAGAGTTCAAGGAGTAAGAGGTTTAAGGTGTCTTCAACAGTGCTTGTTCCTCCTACTTTCACTCCTTCACCATATGATTATTTCCACTTTCTCACACCCATTCCAAATCCAATCTCTCTCTTTCTTTCTCTGCAATTTTCCCCCAAATTCTCTCTCCTAGGGTTCCGGCTCCAAACCCTCGATTCCTCCGATAAGGTTCTGTGA 924 0.4113 MRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARVLRGENARTNFALFGSNIGGSSNDLLSKSDEKIGLNFASLKAKLSKNIQNIMARASDNKNNSTKFSSSRSRVSDHFTFASIFKRRNSYQQYPHHEMPSPIIDMKNIDKVVQPSIIVPPLDNDLSHNNNNHHNGSPSSWENSSVSDCSSCDWFGSSDFADFSVGDQGYLDQLLGWVESSNLCSSGVGSDFDEDESSRSKRFKVSSTVLVPPTFTPSPYDYFHFLTPIPNPISLFLSLQFSPKFSLLGFRLQTLDSSDKVL 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30963g00001 307 Pfam AP2 domain 3 52 IPR001471 GO:0003700|GO:0006355
Stsc30963g00001 307 SUPERFAMILY DNA-binding domain 4 60 IPR016177 GO:0003677
Stsc30963g00001 307 PRINTS Ethylene responsive element binding protein signature 4 15 IPR001471 GO:0003700|GO:0006355
Stsc30963g00001 307 PRINTS Ethylene responsive element binding protein signature 26 42 IPR001471 GO:0003700|GO:0006355
Stsc30963g00001 307 CDD AP2 3 60 IPR001471 GO:0003700|GO:0006355
Stsc30963g00001 307 FunFam ethylene-responsive transcription factor RAP2-11 2 61 - -
Stsc30963g00001 307 SMART rav1_2 3 66 IPR001471 GO:0003700|GO:0006355
Stsc30963g00001 307 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 2 169 - -
Stsc30963g00001 307 MobiDBLite consensus disorder prediction 168 190 - -
Stsc30963g00001 307 Gene3D AP2/ERF domain 2 61 IPR036955 GO:0003700|GO:0006355
Stsc30963g00001 307 ProSiteProfiles AP2/ERF domain profile. 3 60 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30963g00001 Stsc-Chr30963 1969 4676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30963g00001 3 60 AP2-EREBP Transcription Factor Family AT5G19790 74.138 1.85e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc30963g00001 AP2 4.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30963g00001 K09286 - qsa:O6P43_017554 277.715