Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30959g00001 ATGTCTGCTCTTCTCACCGACGATCTTAACGATCTTTCCATCAATCCCCAGATTCAGAGTGAAACAGGACTTGAATGTGAAGGGGAGATTCGTGGGGTGGAAGGTGGTGGTGGGAACCATGTTCATCGTGAGGGTCTTTGCGCCATTTGCTTGGACAATATTCCCCTTCAGGATACTGCTCTTGTAAAAGGTTGCGAGCATGCATACTGTGTGACGTGCATTCTTCGCTGGGCTACTTACAGAGAGAGAGTTACCTGCCCTCAGTGTAAACATCCATTCGACTTCCTCTTTGTCCATCGCTCGCTTGATGGCAGCATCCAGGACTACATGTTTGAGGAGAGTGTTTGTCTACTACTTAGGGCTTCATGGTTTCAACCTCTTAAGGTCGAAAAACAAGTGGAGCATGAAGATGCCTTTGATCTCGTTGAAGAATTTTATCCATATCAATATGATTATGAGTACGAAGAGGAGGAGGATGATGATGATCTAGATGAAGTTTACTATGGTAGCTCATCAAATCTTCGCATTGGTAACCGGCGATGGGGAGACAACGGATATGTCAGATCTGGGCGGCTCGAAGCAAGGCCAGTCCCTAGATCAAACTTCCATGATTCAGGAGGCGCAAGTTCATCATCTCGCGAGTCAAAGAAGAAGGAAGCAGCTGAAAAAGTTATGACAGGGAGACGGGCAAAGAGGGCTTTGAAGCGGGAGGCTGCTGATAAGGCTGCTGCAGCAAAGCATCAGCAGCATCTGGTGAGGTTGGGCAGGAAGTGA 774 0.4767 MSALLTDDLNDLSINPQIQSETGLECEGEIRGVEGGGGNHVHREGLCAICLDNIPLQDTALVKGCEHAYCVTCILRWATYRERVTCPQCKHPFDFLFVHRSLDGSIQDYMFEESVCLLLRASWFQPLKVEKQVEHEDAFDLVEEFYPYQYDYEYEEEEDDDDLDEVYYGSSSNLRIGNRRWGDNGYVRSGRLEARPVPRSNFHDSGGASSSSRESKKKEAAEKVMTGRRAKRALKREAADKAAAAKHQQHLVRLGRK 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30959g00001 257 SMART ring_2 47 89 IPR001841 -
Stsc30959g00001 257 MobiDBLite consensus disorder prediction 210 247 - -
Stsc30959g00001 257 ProSiteProfiles Zinc finger RING-type profile. 47 90 IPR001841 -
Stsc30959g00001 257 Pfam Ring finger domain 47 90 IPR001841 -
Stsc30959g00001 257 MobiDBLite consensus disorder prediction 192 257 - -
Stsc30959g00001 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 113 IPR013083 -
Stsc30959g00001 257 SUPERFAMILY RING/U-box 40 97 - -
Stsc30959g00001 257 ProSitePatterns Zinc finger RING-type signature. 65 74 IPR017907 -
Stsc30959g00001 257 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 36 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30959g00001 Stsc-Chr30959 4201 6551 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30959g00001 5 257 C3H Transcription Factor Family AT5G19430 55.133 8.28e-79 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30959g00001 - - gmx:100777135 285.419