Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30954g00002 ATGGCCTCTTGCGACGACGACGACGACGAATTCTCTCTCCTCCACCAACCCTACGCGCCACCGTCCCACCACCACAACTACTCTGCCGCCGTCGCCGCCGCTTCAACCGCCGTTCAACCTAAGCCTGTCTCCGACGCCGACGCCGATGATTATAGCAATCCCTTCGACCAAGACACCAACGCCACCGAGAAGAGAAAAGATCGAGACGAGATCGGCAACAACAACAACAGCAACAGCAACGATGCATCGTACGGTTTCAACAAACGAGCTAAGCCTACGACGAGTGCTGCCGGATCGGGATCTGCCGGCTCCGGCGCCGAGTACCGGAAGGACAGGGAGGAGTGGAGCGACACGGCGATCGTGTGTTTGCTAGATGCGTACACGGAGAAGTTCACACAGCTGAATCGCGGGAATCTGAGGGGGAGGGACTGGGAGGAGGTGGCGGCGGTGGTTTCGGAGCGGTGCGAGAACCAGTCGAAGAGCGTGGAGCAGTGCAAGAATAAGGTCGATAATCTGAAGAAGAGGTACAAGCTTGAGAGGCACAGGATCAGCAGCGGATGCATCACTGCAAGCCACTGGCCTTGGTTCAAGCACATGGAGAACATCGTCGGGAACTCGCTTTCCGCGGGGAAGTTCGCCGGCGGCGACGAGGACAAGGCTACCGTCGCCTCACCCGTGGGGAACTCCCCTCGGCAACCGAAGAGATATGGAGCGGCAACACCCAGCAGTGGAGGACAAGTGAATAGCATGAAGTCCAAATCGTTGTCAAACCTTAGATGGCGAAGGGTAATCCTCAAAATTAGTGGTGCTTCTCTTTCAGGATCTGATACCTGCAATATTGACCCAAAGGTAGCTATGTTAATTTCAAGAGAAGTTGCAATAGCCTCCCGCCTTGGCGTTGAGGTTGCCATTGTTGTTGGAGGTCGGAATTTCTTCTGTGGAGATGCATGGGTAACTGCAACAGGATTAGAAAGATGTACTGCATACCAAGTTGGCATGATGGCAACTATGATGAATTCAATATTGCTCCAATCAACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAAGTTCAGTCAGCATGCAGGAGTTTGCTGAACCTTACAATAGGCACCGGGCCATCAGACATCTTGAGAAAGGAAGAGTGGTTATATTTGGTGGAATTGGCTTTGGCACTGGAAATCCACTATTCTCAACTGACATAGCTGCAGCTCTTAGAGCTTTAGAGCTAAATGCTGAAGCTGTTCTCAAGGGTACCAATGTAGATGGTGTATATGACTGCAACTCCAGAGACAGCAATTTCACTTTTGAGCACATATCCTTTAGGGAGCTGGTATCAAGAGGAGTCACTCCTATGGACATGACAGCACTGACATTCTGTGAGGAAAATGCTATTCCTGTTGTGGTTTTCAATATATTGGAGCCTGGGAACATATCAAAGGCTTTATGTGGAGAACAAGTTGGGACACTAGTTGACCACACTGGAGCAATAAGCTAA 1500 0.51 MASCDDDDDEFSLLHQPYAPPSHHHNYSAAVAAASTAVQPKPVSDADADDYSNPFDQDTNATEKRKDRDEIGNNNNSNSNDASYGFNKRAKPTTSAAGSGSAGSGAEYRKDREEWSDTAIVCLLDAYTEKFTQLNRGNLRGRDWEEVAAVVSERCENQSKSVEQCKNKVDNLKKRYKLERHRISSGCITASHWPWFKHMENIVGNSLSAGKFAGGDEDKATVASPVGNSPRQPKRYGAATPSSGGQVNSMKSKSLSNLRWRRVILKISGASLSGSDTCNIDPKVAMLISREVAIASRLGVEVAIVVGGRNFFCGDAWVTATGLERCTAYQVGMMATMMNSILLQSTLEKMGVQTRVQSSVSMQEFAEPYNRHRAIRHLEKGRVVIFGGIGFGTGNPLFSTDIAAALRALELNAEAVLKGTNVDGVYDCNSRDSNFTFEHISFRELVSRGVTPMDMTALTFCEENAIPVVVFNILEPGNISKALCGEQVGTLVDHTGAIS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30954g00002 499 Pfam Myb/SANT-like DNA-binding domain 112 201 IPR044822 -
Stsc30954g00002 499 Gene3D - 115 178 - -
Stsc30954g00002 499 Gene3D - 255 493 IPR036393 -
Stsc30954g00002 499 PANTHER URIDYLATE KINASE 108 498 - -
Stsc30954g00002 499 CDD AAK_UMPK-PyrH-Ec 261 493 IPR015963 GO:0005737|GO:0006221|GO:0033862
Stsc30954g00002 499 MobiDBLite consensus disorder prediction 73 101 - -
Stsc30954g00002 499 MobiDBLite consensus disorder prediction 1 110 - -
Stsc30954g00002 499 Coils Coil 155 182 - -
Stsc30954g00002 499 FunFam Aspartate/glutamate/uridylate kinase family protein 115 178 - -
Stsc30954g00002 499 MobiDBLite consensus disorder prediction 235 253 - -
Stsc30954g00002 499 Pfam Amino acid kinase family 262 472 IPR001048 -
Stsc30954g00002 499 MobiDBLite consensus disorder prediction 218 253 - -
Stsc30954g00002 499 FunFam Uridylate kinase isoform A 252 498 - -
Stsc30954g00002 499 Hamap Uridylate kinase [pyrH]. 258 493 IPR015963 GO:0005737|GO:0006221|GO:0033862
Stsc30954g00002 499 SUPERFAMILY Carbamate kinase-like 259 492 IPR036393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30954g00002 Stsc-Chr30954 8612 12163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30954g00002 95 227 Trihelix Transcription Factor Family AT3G14180 35.766 5.37e-17 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc30954g00002 AA_kinase 2.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30954g00002 - - gmx:100805176 765.377