Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30954g00001 ATGAACAAGGTAGTTCATCATCTGATCTTGTTCTTCACCATCACCATTCTTGTTCTTCTTATTACACCACAACAAGCATTTAGCCACCACAATGACACACATGCACTCACCCTCTTCCGCCTCCAAGCCGATATCCACGGCCACCTACTCCCTAACTGGACCGGCTCCGACGCCTGCTCCTCGGCCGCGCCGTGGCGCGGCGTTTCTTGCTCCCCAAACAACCGTGTCACCACACTCTCCCTCCCTTCCCTTAACCTTAGAGGACCCTTAACACCTCTCTCCTTCCTCACTCACCTTCGGTTTCTTGATCTACACGACAACCGCTTAAATGGCACCATTGCACCTTTGATCTCCAATTGCACCAACCTCATGCTTCTCTATCTCTCCGGCAACGACCTCTCCGGCGAGATTCCACCCGAGATATCCTCCGTCACCGGCCTCCTCCGCCTCGACCTCTCCGGCAACAACATAGGTGGCAAGGTTCCAAGGGAGCTGTTAAATTTGACAAAGCTTCTTACTTTGAGGCTTCAAGACAATGTGCTCAATGGCTTCATACCTGACCTTTCATCTTCCATGGAGAATCTCAGTGAGCTCAACATGACCAACAATGAGTTATATGGGAAGTTACCTGACCCAATGCTCAAGAAGTTTGGTGCTGAAAGCTTCTATGGAAATGAGGGTCTATGTGGTGCAAGCCCACTACCTGTTTGTTCATTTGCCAATGAGAATTCTCCTCCTAATTATGGTGGTGAAGATGGTCATGATGATGATTTGGGACAAACTGTTCCTTCAAATCCAAGCTCAATGCCACAAACAAGTCAGGTTGCAAGGCCAGGAACACAACACCACCATCATAAAAGGTTAAGCCCTGGTGCCATTGTAGCCATTGTTTTGGCAAACTGTGTTGCATTGGTGGTGGTAACATCTTTTCTTGTTGCTCAATGTTGTGGAAGAGAAAGAGGGTCTAATTCTGGTTCCTATGTTGGTAGTGAGAGTGGTAAGAGGAAGAGTAATGGCAGTAGCACTAGTGGCGGTTACGGTAGCGAAAAGAATAAGAGCAGGAACAGGAGCAAGAACAAGAAGGTTTATGCAAATGGTATTGTTAATGGTGGTGGTGATAGTGATGGAACTAGTGGAAGTGATGGAAGCAAGCTTGTGTTCTTTGATAGGAGGAATCAGTTTGAGCTTGAGGATCTGCTAAGAGCTTCTGCTGAGATGCTTGGGAAGGGTAGTTTGGGAACTGTGTATAGGGCAGTGCTTGATGATGGTTGCACTGTGGCAGTTAAAAGGCTTAAAGATGCAAACCCTTGTGCAAGGAATGAGTTTGAGCAATACATGGAGGTTATAGGGAGATTGAAGCATCCAAACATTGTTAGGCTCAGAGCATATTACTATGCCAAGGAAGAGAAGCTTCTTGTCTATGATTATCTCCCCAATGGAAGCCTCCATGCTCTTCTCCATGGGAACCGCGGCCCCGGAAGAATTCCGTTAGATTGGACCACAAGAATAAGCTTGGTGTTGGGAGCGGCTAGAGGCCTTGCTAAGATCCATGCAGAGTATAGTTCAGCCAAAGTGCCTCATGGAAATGTGAAATCTTCCAATGTGCTTCTTGACAAGAATGGTGTTGCTTGCATCTCAGACTTTGGTTTATCCCTTCTATTGAACCCTGTTCATGCCATTGCAAGGTTGGGAGGGTACAGAGCTCCGGAGCAGGCTGAACAAAAGAGACTGTCTCAGCAGGCTGATGTGTATAGTTTCGGTGTCTTGCTGTTGGAAGTCCTCACTGGAAGGGCTCCCTCATCGACTTACCCTTCTCCTGCCCGCCCTCGCAGCGGCCCGGATGAGGAGGAAGAGCTAGCTGTAGATCTTCCTAAATGGGTTCGGTCGGTCGTGAAGGAAGAGTGGACGGGTGAAGTGTTTGATCAGGAGTTATTGAGGTACAAGAACATTGAGGAGGAGCTTGTTTCAATGCTGCATGTTGGGTTGGCTTGTGTGGCGCCGCAGCCGGAGAAGAGGCCAACAATGGCCGAAGTTGCAAAGATGATCGAAGAGATCAGGGTGGAGCAATCCCCCCTTCGAGAGGACTATGATGAATCAAGGAATTCGCTTTCACCTTCCCTTCCCACCACTGAAGATGGTGTAGTATAA 2148 0.4828 MNKVVHHLILFFTITILVLLITPQQAFSHHNDTHALTLFRLQADIHGHLLPNWTGSDACSSAAPWRGVSCSPNNRVTTLSLPSLNLRGPLTPLSFLTHLRFLDLHDNRLNGTIAPLISNCTNLMLLYLSGNDLSGEIPPEISSVTGLLRLDLSGNNIGGKVPRELLNLTKLLTLRLQDNVLNGFIPDLSSSMENLSELNMTNNELYGKLPDPMLKKFGAESFYGNEGLCGASPLPVCSFANENSPPNYGGEDGHDDDLGQTVPSNPSSMPQTSQVARPGTQHHHHKRLSPGAIVAIVLANCVALVVVTSFLVAQCCGRERGSNSGSYVGSESGKRKSNGSSTSGGYGSEKNKSRNRSKNKKVYANGIVNGGGDSDGTSGSDGSKLVFFDRRNQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCARNEFEQYMEVIGRLKHPNIVRLRAYYYAKEEKLLVYDYLPNGSLHALLHGNRGPGRIPLDWTTRISLVLGAARGLAKIHAEYSSAKVPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYRAPEQAEQKRLSQQADVYSFGVLLLEVLTGRAPSSTYPSPARPRSGPDEEEELAVDLPKWVRSVVKEEWTGEVFDQELLRYKNIEEELVSMLHVGLACVAPQPEKRPTMAEVAKMIEEIRVEQSPLREDYDESRNSLSPSLPTTEDGVV 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30954g00001 715 SUPERFAMILY Protein kinase-like (PK-like) 405 683 IPR011009 -
Stsc30954g00001 715 Gene3D Transferase(Phosphotransferase) domain 1 477 704 - -
Stsc30954g00001 715 MobiDBLite consensus disorder prediction 689 715 - -
Stsc30954g00001 715 Gene3D Phosphorylase Kinase; domain 1 378 476 - -
Stsc30954g00001 715 FunFam pollen receptor-like kinase 1 372 476 - -
Stsc30954g00001 715 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 687 IPR046959 -
Stsc30954g00001 715 SUPERFAMILY L domain-like 29 213 - -
Stsc30954g00001 715 MobiDBLite consensus disorder prediction 260 278 - -
Stsc30954g00001 715 MobiDBLite consensus disorder prediction 321 379 - -
Stsc30954g00001 715 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
Stsc30954g00001 715 Pfam Protein kinase domain 405 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30954g00001 715 FunFam Nuclear pore complex protein NUP107 29 187 - -
Stsc30954g00001 715 ProSiteProfiles Protein kinase domain profile. 401 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30954g00001 715 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 477 695 - -
Stsc30954g00001 715 CDD STKc_IRAK 407 685 - -
Stsc30954g00001 715 Gene3D Ribonuclease Inhibitor 25 94 IPR032675 -
Stsc30954g00001 715 Gene3D Ribonuclease Inhibitor 95 244 IPR032675 -
Stsc30954g00001 715 MobiDBLite consensus disorder prediction 599 618 - -
Stsc30954g00001 715 MobiDBLite consensus disorder prediction 242 286 - -
Stsc30954g00001 715 MobiDBLite consensus disorder prediction 321 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30954g00001 Stsc-Chr30954 5334 8064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30954g00001 30 711 Receptor kinase-like Gene Family AT2G36570 66.570 0.0 880
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc30954g00001 Pkinase 2.3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30954g00001 - - gmx:102660494 989.178