Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30951g00007 ATGAATAAACAGTCCGGAAGGCCTCGGGGCTTTGGCTTTGTAACGTTTGCCGATTCAGCTGTTGCTGATGAAGTTTTGTCGCAGGAGCATACCATAGATGGCAGAGTGGTTGAAGTGAAGAGGACTGTCCCTAGGGAGGACATGGAAGTTACTGGAGTATTCAGAACAAAGAACATCTTTGTTGGTGGATTACCCCAGTTTTTCACTGATAATGAATTGAAGGATTACTTTTCAACTTATGGTAATATTGTTGAGCACCAGATCATGCTAGATCATAAGACTGGAAGATCTAGAGGCTTTGGATTTGTCACTTTTGACAATGAAGATTCAGTTGAAAAGGTCTTTTCCGCCGGTAAAATACACGAACTTGGAGGCAAGCAGGTTGAGATTAAGAAAGCCAAGCCTAAAAGATCAGGAGCCGATAATAGTAGCTCTTCGCGGAATTCATATGGTCTTTTTGGCAATGGAATGGATGGATTTGGTGGTGCACACAGTTCTAGAGGAAGCTATGGAGGAATCTCGCCGGCATCATACGGTGGCTATTGTGGATATGGTCCAATGTATGGCTTTGGTGGGTTTAGAGTAAATCCTTATGGTAATAGTGGTGGTGCTGGTTTTGGTGGCATGAATATGTATGGAGATAATGCGTATGGAAGAGGCGGAAGTTTCAATCGGAGTGGTAGCAATGACATTGATGGTCCTACTGCTGCAAGTGCAAGATATCATCCTTGCTTGAAGTGA 741 0.4345 MNKQSGRPRGFGFVTFADSAVADEVLSQEHTIDGRVVEVKRTVPREDMEVTGVFRTKNIFVGGLPQFFTDNELKDYFSTYGNIVEHQIMLDHKTGRSRGFGFVTFDNEDSVEKVFSAGKIHELGGKQVEIKKAKPKRSGADNSSSSRNSYGLFGNGMDGFGGAHSSRGSYGGISPASYGGYCGYGPMYGFGGFRVNPYGNSGGAGFGGMNMYGDNAYGRGGSFNRSGSNDIDGPTAASARYHPCLK 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30951g00007 246 Gene3D - 1 49 IPR012677 -
Stsc30951g00007 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 44 IPR000504 GO:0003723
Stsc30951g00007 246 SUPERFAMILY RNA-binding domain, RBD 2 48 IPR035979 GO:0003676
Stsc30951g00007 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 135 IPR000504 GO:0003723
Stsc30951g00007 246 SUPERFAMILY RNA-binding domain, RBD 56 145 IPR035979 GO:0003676
Stsc30951g00007 246 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 2 243 - -
Stsc30951g00007 246 SMART rrm1_1 58 131 IPR000504 GO:0003723
Stsc30951g00007 246 Gene3D - 52 181 IPR012677 -
Stsc30951g00007 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 127 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30951g00007 Stsc-Chr30951 13204 14278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30951g00007 5 136 Eukaryotic Initiation Factors Gene Family AT4G34110 30.147 6.82e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30951g00007 K12741 - gmx:100818080 281.567