Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30951g00001 ATGGCTGCACTTGTCCGAGCTCCACCCAAAGATTTCATCCTCATCAAGCATGAATGGGCTGCCATACGCATTCAGGCACTCTTCCGAGCTTTCTTGGCTAGGAGAGCTTTGAGAGCCTTGAGGGCAGTGGTAAGGTTGCAAGCTATATTTCGAGGTCGGTTAGTCCGAAAGCAAGCGGTTGTTACTCTAAGGTGTATGCAGGCTCTTGTTAGGGTTCAGGCACATGTAAGGGCAAGGAAAGTGAGGAGCTCTCCAGAAGGGAAAGCAGTGCAGAAATTGTTGGATGAACATCGCTGCCTTGCTGATCCTGTTAAGCAGGCTGAGGAAGGATGGTGTCACATTCCTGGGACTGCAGATGAAGTTAAAGCAAAGCTAAGAATGAGGCAGGAAGGAGCCATCAAGAGGGATAGAGCCATGGCATACTCTCTCTCCACACAGTCAAGAGGGTGTGCTAGTCCAAACTCAAGAGCCTCTAAGGCAGAGGCATTGACTCCTTTCAAGCATCAGAACCTAGACAATAAGAGCTTAGGAAGCAGCTTGTTAGAAAACTGGATGGCATCAAAGCCCTGGGAAAGTCCAATCTCCAAGAAAAGTGATGATCACATTGTTCAATCAAGAAGGAATGGTGTCACAACCAGGATTTCAATGAAATCTCTTCCGACAAGTAATTCCACTCCATCGTCTTCGGCGATGAGCTCTGATTGCATGTATGATGATAGCCCTGCATCAACATGCACATCAGAGGAAAGAGGTGTAGTTCATAAGCCTAGTTACATGAATTTGACACAATCAACCAAGGCAAAATTGAAGTCTTGCAGGAGTTCTTCACAGAATTCAAAGGATTCTTATTTGTCTCATAGCATAACACTTGTGAATGGAGATGCTAGAAGCAGTGGTGGTTCTGATGCTTCAGTTAACTTGTGGAAAGGTCTTTGTTCAACACCTCTAAGGGCAAGTTATCAAAGAAGATATGTTAGGAGGTAG 984 0.4553 MAALVRAPPKDFILIKHEWAAIRIQALFRAFLARRALRALRAVVRLQAIFRGRLVRKQAVVTLRCMQALVRVQAHVRARKVRSSPEGKAVQKLLDEHRCLADPVKQAEEGWCHIPGTADEVKAKLRMRQEGAIKRDRAMAYSLSTQSRGCASPNSRASKAEALTPFKHQNLDNKSLGSSLLENWMASKPWESPISKKSDDHIVQSRRNGVTTRISMKSLPTSNSTPSSSAMSSDCMYDDSPASTCTSEERGVVHKPSYMNLTQSTKAKLKSCRSSSQNSKDSYLSHSITLVNGDARSSGGSDASVNLWKGLCSTPLRASYQRRYVRR 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30951g00001 327 PANTHER IQ-DOMAIN 5-RELATED 7 284 - -
Stsc30951g00001 327 Pfam IQ calmodulin-binding motif 41 58 IPR000048 GO:0005515
Stsc30951g00001 327 Pfam IQ calmodulin-binding motif 19 38 IPR000048 GO:0005515
Stsc30951g00001 327 ProSiteProfiles IQ motif profile. 41 68 IPR000048 GO:0005515
Stsc30951g00001 327 SMART iq_5 39 60 IPR000048 GO:0005515
Stsc30951g00001 327 SMART iq_5 16 38 IPR000048 GO:0005515
Stsc30951g00001 327 ProSiteProfiles IQ motif profile. 17 45 IPR000048 GO:0005515
Stsc30951g00001 327 Gene3D - 17 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30951g00001 Stsc-Chr30951 811 2580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30951g00001 1 311 IQD Protein Family AT1G72670 49.390 9.46e-84 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30951g00001 - - gmx:100816492 390.193