Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30947g00004 ATGACCTCTGCAGCATCACTTGATAATTCTCTGTCTGACATGTACCGTTCTCCTCCAAGACCATTACCATATGATGCAGAACAGAGGTTTTTTCGTGCCCGTGATGGGCTAGTTTCAAGGCGTGAGAAGGGCTCAAGTCATTCAAATGAGGAAACAGAACCCTTAAGAAGTAATGTAGACGATACAGAATGTTTAAATTTGGGAGACAAATGGAATGAACGTGGCTGTGACGATGAATCAAAGGAATACCGTTCTAAGTCCTCACTAAAAGTTTCATCAGCAAAATATACAACTGGAGTTGGGCTTGTCTATGCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGCCTTGAAGAATACACTACCGAGAATCCGAAGATAATGACAAAATGCTCTCACCATTTTCATCTCGGTTGCATTTATGAGTGGATGGAGAGAAGTGACAACTGTCCTGTTTGTGGAAAGGTGATGGTATTCGATGAAACAACATACTCTTGA 498 0.4177 MTSAASLDNSLSDMYRSPPRPLPYDAEQRFFRARDGLVSRREKGSSHSNEETEPLRSNVDDTECLNLGDKWNERGCDDESKEYRSKSSLKVSSAKYTTGVGLVYASSEEEDVCPTCLEEYTTENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETTYS 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30947g00004 165 MobiDBLite consensus disorder prediction 27 58 - -
Stsc30947g00004 165 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 5 161 - -
Stsc30947g00004 165 SUPERFAMILY RING/U-box 108 160 - -
Stsc30947g00004 165 MobiDBLite consensus disorder prediction 1 61 - -
Stsc30947g00004 165 FunFam E3 ubiquitin-protein ligase At3g02290-like 90 160 - -
Stsc30947g00004 165 Pfam RING-H2 zinc finger domain 108 153 IPR024766 GO:0008270
Stsc30947g00004 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 161 IPR013083 -
Stsc30947g00004 165 CDD RING-H2_AIRP1-like 109 157 - -
Stsc30947g00004 165 ProSiteProfiles Zinc finger RING-type profile. 113 153 IPR001841 -
Stsc30947g00004 165 SMART ring_2 113 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30947g00004 Stsc-Chr30947 16815 21178 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30947g00004 1 162 C3H Transcription Factor Family AT5G15790 59.172 1.18e-61 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30947g00004 - - gmx:100790104 297.745