Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30947g00003 ATGGGTTCTGTTTGTTGCTGTCTGAGATTTGATGATTTTGAAGATTATGTAAATCCAAATAGTTCTGTATATAGGAACTGTGTCTGTCTCAGTTGCTTGATACAGAATCTTTTGAATGTGTATGCATCAATATTCCGCAGAGGGGAAGTGCATTCGGCTCCTTCATCCTTGCAGGGGGCTGCATCCATGACCTCTGCAGCATCACTTGATAATTCTCTGTCTGACATGTACCGTTCTCCTCCAAGACCATTACCATATGATGCAGAACAGAGGTTTTTTCGTGCCCGTGATGGGCTAGTTTCAAGGCGTGAGAAGGGCTCAAGTCATTCAAATGAGGAAACAGAACCCTTAAGAAGTAATGTAGACGATACAGAATGTTTAAATTTGGGAGACAAATGGAATGAACGTGGCTGTGACGATGAATCAAAGGAATACCGTTCTAAGTCCTCACTAAAAGTTTCATCAGCAAAATATACAACTGGAGTTGGGCTTGTCTATGCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGCCTTGAAGAATACACTACCGAGAATCCGAAGATAATGACAAAATGCTCTCACCATTTTCATCTCGGTTGCATTTATGAGTGGATGGAGAGAAGTGACAACTGTCCTGTTTGTGGAAAGGTGATGGTATTCGATGAAACAACATACTCTTGA 684 0.4167 MGSVCCCLRFDDFEDYVNPNSSVYRNCVCLSCLIQNLLNVYASIFRRGEVHSAPSSLQGAASMTSAASLDNSLSDMYRSPPRPLPYDAEQRFFRARDGLVSRREKGSSHSNEETEPLRSNVDDTECLNLGDKWNERGCDDESKEYRSKSSLKVSSAKYTTGVGLVYASSEEEDVCPTCLEEYTTENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETTYS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30947g00003 227 CDD RING-H2_AIRP1-like 171 219 - -
Stsc30947g00003 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 222 IPR013083 -
Stsc30947g00003 227 Pfam RING-H2 zinc finger domain 170 215 IPR024766 GO:0008270
Stsc30947g00003 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 60 223 - -
Stsc30947g00003 227 SMART ring_2 175 215 IPR001841 -
Stsc30947g00003 227 ProSiteProfiles Zinc finger RING-type profile. 175 215 IPR001841 -
Stsc30947g00003 227 FunFam E3 ubiquitin-protein ligase At3g02290-like 152 222 - -
Stsc30947g00003 227 SUPERFAMILY RING/U-box 170 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30947g00003 Stsc-Chr30947 16815 21178 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30947g00003 1 224 C3H Transcription Factor Family AT5G15790 59.052 1.74e-88 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30947g00003 - - gmx:100777068 412.149