Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30942g00004 ATGAGGAAAGTTATGGAGGAGAGGCGCAAATCACCAGTAAAAAAGGGAGATTTTATGGAGCAGGTAATCAAAGATATGGGAGTTGAGCCTCTTTATTTGACTGAAGATCAAGTTATTTACTTTACCGCTGGAGTCTGGGTGGCTACTTTTGTCACCAACTCAATTATCTTGTCATTAATCTTCAAATTCTTGTCGGATCATCCTTCTGTCCTTGAAGAACTAAGGGTGGAACACGAGGATATTCTTAAGAGCAGAGATGGATCAGGCTCTAATTTAACATGGGATGAATACAGATCCTCCATGAAACTTACCAATTATGTAATCAACGAGGCTCTAAGATTCTCAGCTTTATTCCCTGGATTATTAAGAAAGGCTTTGAGCGATATCCCCGTAAACGGATATACTATTCCTGCTGGTTGCTGCATGCTGATTGTGACTCCCGTACTTCATATGAATCCAGAAATTTATAAGGATCCATTTACCTTCAATCCATGGCGTTGGAAAGAGCTTGATGCCCTCACTGTGTCAAAATATTTCAAGCCTTTTGGTGGAGGAGCGAGACAATGCCCCGGGGCTGATATAAGTAGAGCTTTCTTGGCCGTTTTCATTCATGTTTTGGTCACAAAATTTAGGTGGACAAAAGTCAAGGGAGGGACACTTGTTCGGAATCCCTTGTTAGGATTTCGTGATGGAGTTCATGTCAAAATTTGGGAGAAGCCACAAACTAATAAGACTAACTAA 741 0.4089 MRKVMEERRKSPVKKGDFMEQVIKDMGVEPLYLTEDQVIYFTAGVWVATFVTNSIILSLIFKFLSDHPSVLEELRVEHEDILKSRDGSGSNLTWDEYRSSMKLTNYVINEALRFSALFPGLLRKALSDIPVNGYTIPAGCCMLIVTPVLHMNPEIYKDPFTFNPWRWKELDALTVSKYFKPFGGGARQCPGADISRAFLAVFIHVLVTKFRWTKVKGGTLVRNPLLGFRDGVHVKIWEKPQTNKTN 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30942g00004 246 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 182 191 IPR017972 GO:0005506|GO:0016705
Stsc30942g00004 246 PRINTS E-class P450 group IV signature 189 207 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30942g00004 246 PRINTS E-class P450 group IV signature 134 148 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30942g00004 246 PRINTS E-class P450 group IV signature 150 168 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30942g00004 246 PRINTS E-class P450 group IV signature 101 117 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30942g00004 246 PRINTS E-class P450 group IV signature 173 189 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30942g00004 246 Gene3D Cytochrome P450 1 238 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30942g00004 246 SUPERFAMILY Cytochrome P450 2 226 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30942g00004 246 Pfam Cytochrome P450 2 218 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30942g00004 246 PRINTS P450 superfamily signature 180 189 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30942g00004 246 PRINTS P450 superfamily signature 189 200 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30942g00004 246 PRINTS P450 superfamily signature 66 79 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30942g00004 246 PRINTS P450 superfamily signature 106 117 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30942g00004 246 PANTHER CYTOCHROME P450 26 2 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30942g00004 Stsc-Chr30942 24858 26820 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30942g00004 1 239 Cytochrome P450 AT1G12740 43.496 1.06e-65 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30942g00004 - - aip:107619015 301.982