Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30941g00002 ATGTTCGATCTTAACCTGAATGCCGATTCCACTCAGCACGATGACTCGCCCGTGCTACTCAGGGAGAAGATTCCGGAAGCGTCTTCCGGGACCTCGAATTCCTCCGTGGTGAATGCGGAGGGCTCGAGCAACGGAGGTGGCGGTGGGGACGACGACTCGTGTTCCACACGCGCCACTGGCAGCGGCGATGTCTACACCTTCAATTTCGATATTCTGAAGGTGGAAGGCGGGAGTGATAACGCCGCCGCGACGAAGGAGCTGTTTCCGGTGAGTTCCGGGAACTGGCAGGGGCAACCTTCCACGTCGTCGGTTCCGGCGAGGAAGAGCTGGATGGATCTGTCTCTGGATCAGCATCGAGCTGAAAGCGCCGAGATGAAGAAGATTGTCCATGTTCAGCAGCAGCAGCAACAACAGCCTCCGCAAGCGAAGAAGAGTAGGAGGGGCCCACGGTCAAGGAGCTCGCAGTACAGAGGTGTGACCTTCTACAGGAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTTTATCTGGGTGGATTTGACACCGCTCATGCCGCTGCTAGAGCTTATGATCGAGCTGCTATCAAGTTTAGGGGACTTGATGCAGACATCAATTTTAATCTCGTTGACTATGAGGACGATCTCAAACAGATGAAAAATCTCTCCAAGGAGGAATTTGTTCACATACTCCGTCGCCAAAGCACTGGTTTCTCAAGGGGAAGTTCAAAATACCGAGGAGTGACACTTCACAAATGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGTCTTAA 861 0.5261 MFDLNLNADSTQHDDSPVLLREKIPEASSGTSNSSVVNAEGSSNGGGGGDDDSCSTRATGSGDVYTFNFDILKVEGGSDNAAATKELFPVSSGNWQGQPSTSSVPARKSWMDLSLDQHRAESAEMKKIVHVQQQQQQQPPQAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30941g00002 286 CDD AP2 246 286 IPR001471 GO:0003700|GO:0006355
Stsc30941g00002 286 FunFam AP2-like ethylene-responsive transcription factor 154 213 - -
Stsc30941g00002 286 MobiDBLite consensus disorder prediction 26 55 - -
Stsc30941g00002 286 ProSiteProfiles AP2/ERF domain profile. 155 211 IPR001471 GO:0003700|GO:0006355
Stsc30941g00002 286 SMART rav1_2 247 286 IPR001471 GO:0003700|GO:0006355
Stsc30941g00002 286 SMART rav1_2 155 217 IPR001471 GO:0003700|GO:0006355
Stsc30941g00002 286 CDD AP2 155 210 IPR001471 GO:0003700|GO:0006355
Stsc30941g00002 286 Gene3D AP2/ERF domain 246 286 IPR036955 GO:0003700|GO:0006355
Stsc30941g00002 286 Gene3D AP2/ERF domain 154 213 IPR036955 GO:0003700|GO:0006355
Stsc30941g00002 286 MobiDBLite consensus disorder prediction 125 156 - -
Stsc30941g00002 286 ProSiteProfiles AP2/ERF domain profile. 247 286 IPR001471 GO:0003700|GO:0006355
Stsc30941g00002 286 SUPERFAMILY DNA-binding domain 246 285 IPR016177 GO:0003677
Stsc30941g00002 286 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 88 285 - -
Stsc30941g00002 286 MobiDBLite consensus disorder prediction 128 144 - -
Stsc30941g00002 286 MobiDBLite consensus disorder prediction 1 55 - -
Stsc30941g00002 286 Pfam AP2 domain 155 203 IPR001471 GO:0003700|GO:0006355
Stsc30941g00002 286 Pfam AP2 domain 246 285 IPR001471 GO:0003700|GO:0006355
Stsc30941g00002 286 SUPERFAMILY DNA-binding domain 154 211 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30941g00002 Stsc-Chr30941 2863 4480 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30941g00002 1 270 AP2-EREBP Transcription Factor Family AT2G28550 63.636 2.18e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc30941g00002 AP2 1.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30941g00002 K09284 - gmx:100777102 390.193