Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30938g00002 ATGACTGAAGTTGTAGCAGAACTCGATTTGAATCAAGATGCTTTGCGTGACATAGAAGAGCGAATTAGACGCCTAGAAAGCCTAATTTTCAGAGCTAGGCAGCCACAGAGGTGGCACCATAGTCACAGTCCTGTCCGAATAACTACATTCACTGGAGAAGTGTTAATGGATGGGATTCAAGACGAAGGAAGACCACAGCCAGAAGAGGTGGAGGTTGGAGATGGTAACATGGAAAACGGCCGTTGTAGGGGCAAAAGGAAGGCATCTGCAATTTTGGTTGCTAAAGCGCTTGGAATGGAAACTAAAAGTGACAAGTCAAAGGGACGTGCCGGAAACTTTTTTGATTGTAACATATGCTTGAGAATGGCGAGAGATCCTGTTTTGACTTGCTGTGGTCACTTGTTCTGCTGGCCGTGCTTCTTTCGCTTGTCGTATGCTTACGCAAATGCCAGGGAATGCCCTGTGTGCGAAGGAGAGGTCATGGAAACATGCATTACTCCGATTTATGGATCTGCAAGAGTTGACGACAGCAATCAGCTAGGATTTGAAGAGAATGGATGTGAAGTAGTACCTGCTCGACCTTGCGCACGCAGAGTTAAGCATAGCAAGGTGAAGTGTTTCAGAAATCGCGGTTTTCCATTAAATAATCCTCTCCCATCGTCAAATCAAAGTTCAAGGCCAGTAATGCAAGGAGTTGCTTCACTTTCACCTGTTGTAACTCCTCCACAAAGACCTTTAGAGGGACTTGATTCTTACCTTGACAGTGACTCTGAAGGAAGCACAGTACAGCTGAATCCGGATGCTATTGATGGAGATTTGAATTTACACACTGCTGCTTGA 840 0.4536 MTEVVAELDLNQDALRDIEERIRRLESLIFRARQPQRWHHSHSPVRITTFTGEVLMDGIQDEGRPQPEEVEVGDGNMENGRCRGKRKASAILVAKALGMETKSDKSKGRAGNFFDCNICLRMARDPVLTCCGHLFCWPCFFRLSYAYANARECPVCEGEVMETCITPIYGSARVDDSNQLGFEENGCEVVPARPCARRVKHSKVKCFRNRGFPLNNPLPSSNQSSRPVMQGVASLSPVVTPPQRPLEGLDSYLDSDSEGSTVQLNPDAIDGDLNLHTAA 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30938g00002 279 ProSiteProfiles Zinc finger RING-type profile. 116 157 IPR001841 -
Stsc30938g00002 279 SMART ring_2 116 156 IPR001841 -
Stsc30938g00002 279 Pfam zinc-RING finger domain 116 157 IPR001841 -
Stsc30938g00002 279 SUPERFAMILY RING/U-box 112 163 - -
Stsc30938g00002 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 93 202 IPR045103 GO:0005783|GO:0006511|GO:0061630
Stsc30938g00002 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 226 IPR013083 -
Stsc30938g00002 279 Coils Coil 8 28 - -
Stsc30938g00002 279 MobiDBLite consensus disorder prediction 217 231 - -
Stsc30938g00002 279 MobiDBLite consensus disorder prediction 217 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30938g00002 Stsc-Chr30938 17002 19179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30938g00002 96 200 C3H Transcription Factor Family AT3G58030 49.091 1.68e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30938g00002 - - adu:107458846 424.476