Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30935g00007 ATGATGGCTGGGAACCCTAATAATTGGTGGAGCATGAATCCATCATCTTCTTTGTTCCCTTATGCTCAATATGTTCTTGGATCTTCTCCTTCTCCTTCTTCTTCTTCTTCTTCAATTCCTTTTAATCCTTTGGTGCCAGAAATTCAAGCAGAACTACCTTCTTCTCAATCTTGGAGCCAACTTCTTTTCACTGGGTTACCAGGAGAAGAAGAGAGACTTGGATTCAATCATTTTCATGAATCAAGGGATGACCATAACATCCTCATCAACAACAATAATAATAATATTATTGTTGATGCAATAAAGCAAGAGGTTTCCCAAAGTGGCAACTTGTACGGCCATGGTGGTAGCACTAATGGTGGCCATGAGGAAGAATTTCATGGTTCAAATAATGGCTCAACTTGGTCTTCACATATGCTTCCAATTAATTCTTCATCACCTAGCTCAAGTCTCACTACCAATAATAATAATTTATTGGATTTTGCTTATAACAAGGTTGATCATAGGAAGAATAATCAACATCCACCTTATGCCACACCTGAGTGTAATAATAGCACATCCACTGCTGGAATTTGCAAGAAAGCTAAGGGTCAAACAACTTCAAGCTTACCACCATTGAAGGTGAGAAAGGAGAAGCTTGGTGATAGAATCACAGCACTTCACCAGCTAGTTTCTCCATTTGGAAAGACTGACACAGCTTCTGTGTTGTTAGAAGCCATTGGATATATCAGATTCCTTCAGAGTCAAATTGAGGCACTTAGTTCTCCATACTTGGGTAATAATGGATCAAAAAACATGAGGAATAGACAATATGTACATGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAGCTGTTGAATGACACTGGCCTAAAAAGAAAGGCAGCTTCAAGCCATAGCCAGGATTCAAAAGATAATAATAATCAAAAGGACTTGAGGAGTAGAGGGTTGTGCTTGGTACCTGTGTCTTTCACCCAACATGTTGGAAATGAAAATGGAGCTGATTTCTGGGCACCAGCATATGGTGGTGGATTCTAA 1044 0.3956 MMAGNPNNWWSMNPSSSLFPYAQYVLGSSPSPSSSSSSIPFNPLVPEIQAELPSSQSWSQLLFTGLPGEEERLGFNHFHESRDDHNILINNNNNNIIVDAIKQEVSQSGNLYGHGGSTNGGHEEEFHGSNNGSTWSSHMLPINSSSPSSSLTTNNNNLLDFAYNKVDHRKNNQHPPYATPECNNSTSTAGICKKAKGQTTSSLPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSSPYLGNNGSKNMRNRQYVHGERNSVFPEDPGQLLNDTGLKRKAASSHSQDSKDNNNQKDLRSRGLCLVPVSFTQHVGNENGADFWAPAYGGGF 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30935g00007 347 CDD bHLH_AtbHLH_like 207 254 IPR045239 -
Stsc30935g00007 347 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 38 329 - -
Stsc30935g00007 347 FunFam Transcription factor bHLH123 family 207 271 - -
Stsc30935g00007 347 MobiDBLite consensus disorder prediction 275 313 - -
Stsc30935g00007 347 MobiDBLite consensus disorder prediction 110 153 - -
Stsc30935g00007 347 MobiDBLite consensus disorder prediction 297 313 - -
Stsc30935g00007 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 258 IPR036638 GO:0046983
Stsc30935g00007 347 MobiDBLite consensus disorder prediction 123 153 - -
Stsc30935g00007 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 246 IPR011598 GO:0046983
Stsc30935g00007 347 Gene3D - 207 268 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30935g00007 Stsc-Chr30935 24270 29142 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30935g00007 68 287 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 41.803 1.60e-40 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30935g00007 - - aip:107617848 484.952