Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30934g00002 ATGAATTCCCCTAATTTCTTTGAGATTCATGATTATTGGGAAACATCAACATCACACCATGATGATTATCCTTCACAAAATCTTAGCTTCCAAACATATTCCAACAACAATTTTGATGATGATTCTCTTTCTTTTGATATCATTGACTTCTCCATACACTCACAACAACAAGTCCCAACAATAGGTAACAACAACAATGTGAATGTGAAGAACAAGAAGCATGAAGAAGTAGAAGATAATGTTTTTCACCATGGTGAAAAAGGAAACTACATAGGTGTAAGGAGAAGGCCATGGGGAAAATTCGCGGCCGAAATTCGAGACACAACAAGGAGTGGAACAAGGGTTTGGCTTGGAACCTTTAATAGTGCTGAAGATGCTGCTTTGGCTTATGATCAAGCTGCATTTGCCATGAGAGGATACAATGCTGTTCTCAATTTTCCAGTGCAAAGGGTCAAAGAATCCTTGCAAGGAATTGAGTATGGTTGTGGCAACAACAGTAAAGGGTATTCACCAGCACTTGCACTCAAAGAGAGGAACTACATGAGAAGAAAAATGTCACCACCATCAAAGGGAAAAGGGAAAAGTGAAGAATCATCATCAAGTAGTAGTGTGATGGTGTTAGAGGATTTGGGAGTTGAATATCTTGAGCAACTTCTAAGCATTTCGGATAATAATCATCAAGGTGAATGGCCTAGTTATTAA 702 0.3846 MNSPNFFEIHDYWETSTSHHDDYPSQNLSFQTYSNNNFDDDSLSFDIIDFSIHSQQQVPTIGNNNNVNVKNKKHEEVEDNVFHHGEKGNYIGVRRRPWGKFAAEIRDTTRSGTRVWLGTFNSAEDAALAYDQAAFAMRGYNAVLNFPVQRVKESLQGIEYGCGNNSKGYSPALALKERNYMRRKMSPPSKGKGKSEESSSSSSVMVLEDLGVEYLEQLLSISDNNHQGEWPSY 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30934g00002 233 Gene3D AP2/ERF domain 89 149 IPR036955 GO:0003700|GO:0006355
Stsc30934g00002 233 CDD AP2 89 149 IPR001471 GO:0003700|GO:0006355
Stsc30934g00002 233 SMART rav1_2 89 153 IPR001471 GO:0003700|GO:0006355
Stsc30934g00002 233 ProSiteProfiles AP2/ERF domain profile. 89 147 IPR001471 GO:0003700|GO:0006355
Stsc30934g00002 233 FunFam Ethylene-responsive transcription factor 2 89 149 - -
Stsc30934g00002 233 MobiDBLite consensus disorder prediction 183 203 - -
Stsc30934g00002 233 SUPERFAMILY DNA-binding domain 90 148 IPR016177 GO:0003677
Stsc30934g00002 233 Pfam AP2 domain 89 139 IPR001471 GO:0003700|GO:0006355
Stsc30934g00002 233 PRINTS Ethylene responsive element binding protein signature 113 129 IPR001471 GO:0003700|GO:0006355
Stsc30934g00002 233 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
Stsc30934g00002 233 PANTHER DNA-BINDING DOMAIN 59 223 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30934g00002 Stsc-Chr30934 19829 20530 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30934g00002 89 230 AP2-EREBP Transcription Factor Family AT3G23240 56.643 1.78e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc30934g00002 AP2 3.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30934g00002 K14516 - gmx:100527364 184.496