Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30925g00004 ATGAACCAAACCATCACCTTCTTCTACTCTTGTCTTATCCTAAACATCATCCTGTACTCTCTGTTGAGCAGAACCAGTTTGTGCAGTTATGTGGATCCACACTTCCTGGCATGTGAACCCCAAACATGCGGCAACCAATCCATAAGATACCCCTTCTACATCCAAGGCATACAGGAATCTTTCTGTGGCTACCCTGGTTTTGCCATCTCTTGTGATGCTAATAATGCCTTCCCAATTCTCAATCTCTCTAACACTCTTTACATCATCCATGAAATATTCTACCAAAACGAATCACTCAGGGTCTCCGATGCTGCTTTTTCATCAACCAACAACAAAACAACAGATTATTGTGTTTCTGCTACACACAACCTCACCCTTCCTCCAACCAAGACCTTCACTCTTCTTCCTCAGAATCATAACAAGGAAATCTTACTCTTCTACGGATGTAACCTGTCATCCATGCCCAGAGAGTTGATAGACTACAGAATAGGGTGTTCTGAAGGGAACAACAAAACGGGTGGTTCCGTTCTCGCATTGTATAAGGACGATGTAAGTACAGTAAAATTGGCGTCCAAGAGTTGCGGGACGGACGGAGAGGTGGTGGATACGGTGGTGGAAGAGGTAAAGAGCAGCGGAGGAGGAGGAGGAGGAGGGATAGAAGAGGCGCTGAGGAGAGGGTTCATGCTGAATTGGACTGCGAGTGATTGCAAGCTGTGCAGTAGCACGGGAGGAAGGTGTGGGTTCAATTCAAGTATATTCACTTTCCAATGTTACTGCACTGATCGAATTCATGCTTCTAAATGTGATATTCCAGGGAAACACGTTCTGAGTAAGAAGGCTAAACTGGGTTTAGGTTTGGGTATTGGCTTCTTAGGCATCTTCATAATTGGGTTGCTCTTGCTCCTCTTCCTAATCTACAACAGAAAACGTGGCTCCTCAAGCAGCAACTTTGAATCAAGATACTCTTATTCCGAGTCCTCTTCCAATCCACACCTAGATAATGGCATTGCTTACCTCGGAGTTCCACTCTTCTCCTACAAGGATCTTAAAGAAGCAACAAACAATTTTGACCATACCAAAGAACTTGGAGATGGAGGCTTTGGCACTGTCTACTATGGCAAACTCCAAGATGGAAGAGAAGTTGCCGTGAAGCGCTTGTATGAGCACAACTACAGGCGAGTAGAGCAATTCATAAATGAAGTTCAGATCCTAACACGTTTGAGGCATAAAAATCTTGTGTCCCTCTATGGCTGCACTTCGCGCCACAGCCGCGAACTGCTACTTGTATATGAATTCATTTCTAATGGCACGGTTGCTTGTCATATCCACGGCGAATTAGCCAAGCGCAGCTTACTACCTTGGGCTACAAGAATCAAAATCGCCATAGAGACTGCTACTGCATTGGCTTATCTTCATGCTTCAGACATCATTCACCGCGATGTGAAGACCAACAACATTCTTCTTGATCACAACTTTACTGTCAAGGTTGCTGATTTTGGCCTTTCAAGACTATTCCCCATTGACGCCACCCACGTCTCCACCGCGCCACAAGGGACCCCTGGCTATGTTGACCCTGAATACCACCAGAATTACCAGCTTACTAGCAAGAGTGATGTGTATAGTTTCGGAGTTGTTCTTATTGAGTTAATATCATCCATGCCTGCAGTTGATATGAACAGGGATAAGGATGAGATTAACTTATCAAATCTAGCCATAAAGAAGATTCAAAGTAGTGCAATTAGTGACTTGGTTGATGGTTCTCTTGGTTTTGATTCAGACAAGGAGGTAAGGAGAATGACAGTTTCGGTAGCGGAATTGGCTTTCCAGTGTTTGCAAAGAGACAAGGAGTTGAGACCTTCCATGGATGAAGTGTTGGATGAACTAAAGAAGATTGAGAGTGGGAAGGATGAGGCTGATGGTATTGAAGTTTCTGAAAATAAGATTGTACATCAAGCACCACCAGCTTCACCTGAATGGGATGAAGTTGGATTATTGAAGAATATGAAGATACCACTACCTTCTTCACCAATCACTGTCACTGATAACTGGGAAAGTAAATGCACCACGCCCAACATCAGTGCTTAG 2085 0.4408 MNQTITFFYSCLILNIILYSLLSRTSLCSYVDPHFLACEPQTCGNQSIRYPFYIQGIQESFCGYPGFAISCDANNAFPILNLSNTLYIIHEIFYQNESLRVSDAAFSSTNNKTTDYCVSATHNLTLPPTKTFTLLPQNHNKEILLFYGCNLSSMPRELIDYRIGCSEGNNKTGGSVLALYKDDVSTVKLASKSCGTDGEVVDTVVEEVKSSGGGGGGGIEEALRRGFMLNWTASDCKLCSSTGGRCGFNSSIFTFQCYCTDRIHASKCDIPGKHVLSKKAKLGLGLGIGFLGIFIIGLLLLLFLIYNRKRGSSSSNFESRYSYSESSSNPHLDNGIAYLGVPLFSYKDLKEATNNFDHTKELGDGGFGTVYYGKLQDGREVAVKRLYEHNYRRVEQFINEVQILTRLRHKNLVSLYGCTSRHSRELLLVYEFISNGTVACHIHGELAKRSLLPWATRIKIAIETATALAYLHASDIIHRDVKTNNILLDHNFTVKVADFGLSRLFPIDATHVSTAPQGTPGYVDPEYHQNYQLTSKSDVYSFGVVLIELISSMPAVDMNRDKDEINLSNLAIKKIQSSAISDLVDGSLGFDSDKEVRRMTVSVAELAFQCLQRDKELRPSMDEVLDELKKIESGKDEADGIEVSENKIVHQAPPASPEWDEVGLLKNMKIPLPSSPITVTDNWESKCTTPNISA 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30925g00004 694 Pfam Protein kinase domain 358 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30925g00004 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Stsc30925g00004 694 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 328 432 - -
Stsc30925g00004 694 FunFam Wall-associated receptor kinase-like 20 433 640 - -
Stsc30925g00004 694 ProSiteProfiles Protein kinase domain profile. 356 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30925g00004 694 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
Stsc30925g00004 694 SMART serkin_6 356 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30925g00004 694 SUPERFAMILY Protein kinase-like (PK-like) 341 632 IPR011009 -
Stsc30925g00004 694 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 15 688 IPR044652 GO:0004672
Stsc30925g00004 694 Gene3D Phosphorylase Kinase; domain 1 329 432 - -
Stsc30925g00004 694 Gene3D Transferase(Phosphotransferase) domain 1 433 643 - -
Stsc30925g00004 694 Pfam Wall-associated receptor kinase galacturonan-binding 38 103 IPR025287 GO:0030247
Stsc30925g00004 694 Pfam Wall-associated receptor kinase C-terminal 187 261 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30925g00004 Stsc-Chr30925 13283 22418 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30925g00004 37 694 Receptor kinase-like Gene Family AT1G25390 46.466 3.25e-173 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc30925g00004 Pkinase 7.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30925g00004 - - psat:127098518 828.165