Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30925g00002 ATGGCTTCACTTTATTTGTTGTTCTTTTCCCTCTTGTTTCCTCACATTCTACTGATTGTTCCTGCTGCTGATGCTGATGCCAATGGGAACCATGATAACTGTCCAAGCTCATTTACTTGTGGAAAACTTGGGAGTTTCCATTACCCATTCACCATGGCAGAGCATTCTGAGTGTGGCTTGTTTCCCATCCAAGGCTGCCTCCTTGATGATACTACACCTAAGTTGATTCAGCTTGACAACAATGCTAAAAGCGTGAACCTTACTGGTGTAGTTGTGCCCAATAAGATCATTACCATCTATGATGATGGTTTCCACACGCGTTTGGGACACAATGAATGTGACACTTTGCACAATAATTACACCCTTCCTTCACCTTCTCCAATTGTGTCTATGTATATCAAGTACAATGTAACTCTCTTCAGATGCAATCACAAACTTAGTACCAAGCTTCCTCCCAATTATGTTAAGCTAGGATGCAACCACAGCTATGAAATCTACTATGATAGAAACAATACACATCCTGAACAAGAGGAGGCTGCCAGATATTTTTCCGGCTGCTCGGTTGTCCAGTTTGCTTCAAAAGACTCCACCGATACCAACGACGTTCTGTCCTTCGTGTCTGCTGAGATGGTTCTTGAAATAGTATTATCTCCTGATTGTGATAACTGCTTCAATCACAGAGGAGGCCTTTGTAAACTTGACAACAATAAACACTTGTTTGTCAAGATCGTGAATTTCTCCACCACAGGTTCAGGTGTTGCTGTTACTCTGCTATGCATTTTGATCATTCTATACTTGTTTAGAAGAAAACATGCTCCCTACCAATCAAGAAGCACACACAGTGATTTAAAAGATCCCACTACAAATCCAGACCCAGAAAGCGGAAGGCACTACTTTGGAGTCCCTCTCTTCTCTTTTGAGGAGCTCAATAAAGCTACAAATAATTTCCATCACTCCACACAACTTGGAAATGGAGGCTTTGGAACAGTTTACTATGGAAAACTGCGAGATGGAAGGGAAGTTGCTGTGAAGCGTTTCTATGATCATAATTACAGAAGAGTGGAACAGTTTATGAATGAAATTGAGATCCTTACTCGCATGCGCCACAGAAACCTTGTGTCCCTCTATGGCTGCACCTCACGCCACAGTCGCGAATTGTTACTTGTGTATGAGTATGTTTCAAATGGAACAGTTGCTGCTCATCTCCATGGTGATTTGTCCAAGAGTGAAACACTTCCATGGCACATAAGGATGAAAATTGCCATTGAGACTGCAAGTTCATTGTCTTATCTCCATGCCTCTGACATCATTCATCGTGATGTGAAAACCAATAACATTCTCCTAGATCATGATTTTTGTGTTAAGGTTGCGGATTTCGGGCTTTCAAGACTGTTCCCCAATGATGTAACGCATGTGTCCACAGCACCACAAGGGACACCGGGCTATGTTGACCCTGAATATCACCGGTGCTACCATCTTACGAACAAGAGTGATGTTTATAGTTTCGGAGTGGTGCTCATTGAGCTTATATCTTCTAAGCCTGCTGTTGATATGGAGAGGCATAAGGATGAGATTAACTTGTCTGATTTGGCCATAAACAAGATTCAAAACAGTGAGTTTAGCGAGCTGGTGGATCCTTGTCTTGGTTTTGATTGGGATAATGAGGTAAAGAGCATGATAGTTTCGGTGGCGGAATTGGCTTTTCAGTGTTTGCAACGGGATAGGGAATTGAGACCTTCCATGGATGAGGTTTTGAAGGCACTCATCATTATTGAAAGTGGAAAGATTAAGGATGAAGATGAAGAAGTAGAGGTAGAGGAAGTAGATGTAGATGTACATGTACGTACACCACCATCTTCATCATCTCCAGATGAGATTGAATTTATGAACAACAGGATGCTACTGCCTTCACCTTAG 1917 0.4199 MASLYLLFFSLLFPHILLIVPAADADANGNHDNCPSSFTCGKLGSFHYPFTMAEHSECGLFPIQGCLLDDTTPKLIQLDNNAKSVNLTGVVVPNKIITIYDDGFHTRLGHNECDTLHNNYTLPSPSPIVSMYIKYNVTLFRCNHKLSTKLPPNYVKLGCNHSYEIYYDRNNTHPEQEEAARYFSGCSVVQFASKDSTDTNDVLSFVSAEMVLEIVLSPDCDNCFNHRGGLCKLDNNKHLFVKIVNFSTTGSGVAVTLLCILIILYLFRRKHAPYQSRSTHSDLKDPTTNPDPESGRHYFGVPLFSFEELNKATNNFHHSTQLGNGGFGTVYYGKLRDGREVAVKRFYDHNYRRVEQFMNEIEILTRMRHRNLVSLYGCTSRHSRELLLVYEYVSNGTVAAHLHGDLSKSETLPWHIRMKIAIETASSLSYLHASDIIHRDVKTNNILLDHDFCVKVADFGLSRLFPNDVTHVSTAPQGTPGYVDPEYHRCYHLTNKSDVYSFGVVLIELISSKPAVDMERHKDEINLSDLAINKIQNSEFSELVDPCLGFDWDNEVKSMIVSVAELAFQCLQRDRELRPSMDEVLKALIIIESGKIKDEDEEVEVEEVDVDVHVRTPPSSSSPDEIEFMNNRMLLPSP 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30925g00002 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
Stsc30925g00002 638 ProSiteProfiles Protein kinase domain profile. 316 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30925g00002 638 FunFam receptor-like protein kinase FERONIA 282 392 - -
Stsc30925g00002 638 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524
Stsc30925g00002 638 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 11 619 IPR044652 GO:0004672
Stsc30925g00002 638 SMART serkin_6 316 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30925g00002 638 Gene3D Transferase(Phosphotransferase) domain 1 393 602 - -
Stsc30925g00002 638 MobiDBLite consensus disorder prediction 614 638 - -
Stsc30925g00002 638 SUPERFAMILY Protein kinase-like (PK-like) 292 590 IPR011009 -
Stsc30925g00002 638 Pfam Protein kinase domain 316 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30925g00002 638 CDD STKc_IRAK 322 591 - -
Stsc30925g00002 638 FunFam Wall-associated receptor kinase-like 20 393 601 - -
Stsc30925g00002 638 Gene3D Phosphorylase Kinase; domain 1 289 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30925g00002 Stsc-Chr30925 10062 12307 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30925g00002 25 597 Receptor kinase-like Gene Family AT1G25390 49.402 8.04e-167 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc30925g00002 Pkinase 8.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30925g00002 - - adu:107467171 997.267