Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30925g00001 ATGGCTCTACCTTACTATTTATTGTTGCTCTTCTTGCTCATCATCTTGTTTCCAGTTAGGCATGCTGTAAATGATAAGCAACACAAGTGTCCACGCTCCTTTGAGCGTGGAAGCCGCGGCAGATTCCAGTTCCCTTACACCAAGACTGAACTCCCTCACTGTGGCTTGCTATTCATTCATGGCTGTGACGATCCGAATCACTACTCGATCAAAACGATCCAACTGGAGAAGAACGGAACAAGGTTAGTGCTTACAGGCTCTATTGACTCAAATAGCAGTATCATCACGGTATATGATGCAGATTTTCACTCGCGTTTGGAACAGAACAAATGTCACGCCTTGGGCACTACCTATACTCTTCCTCCACCTTCTCCTTTACTCTCCGTTTATATCCAATACAATGTGACTCTATTCCGATGCAATAAAAAACTTAGAATAAAGAGGCCTTCGTATTATGGAAACCAAACATGTGGTGACTACGATATCTACTATGATAAAAACAATACGTCTCCCACTATACACGATGCTGGTGGCATTTTCTCACACTGCTCACTTCTTCATTTTGCAACAAAAGATGACATTAATACCACAGATGTTCTATCCTTTGTATCTTCTGAGATAGAACTTGAAGTGGTATTATCTCCTGATTGTGATGATTGCTTCAATCGCAAACGAGGTCAATGTCAGCTTGACACTAACAACAAATTTTACTGTGACAAAGTGCCAAAGGATGATAACAAGAAAGCCTTGAAGCTCGCACTCGGAATAGGTTTAGGTATGAGTTCACTGCTCGGAATTTTGATCATTGGATGCTTCCTTACACGACGTTATCAAAGAAAACATGTTCCTTCAGACCTCCAGTACCTATCAAAAAGCACATACAGTGATGCAAACTATGCCTCTACAAATCCAGAAGCAGAAAGCAGGAGGGGCTACTTTGGAGTCCCTCTCTTCTCTTACAAGGAGCTCAAAGAAGCCACAAACAATTTCCACCACACCACTCAACTAGGACAGGGAGGATTTGGAACAGTTTACTATGGAAAACTTCGAGATGGACGGGACGTTGCGGTAAAGCGCCTTTATGAGCACAACTACAGGAGAATGGAACAGTTTATGAATGAAATCGTTATCCTCGCTCGCTTGCGCCATAAGAATCTAGTATCCCTTTATGGCTACTGCACTTCACCTCACAGGAGTGAACTTCTGCTTGTGTATGAGTTTGTTCAAAATGGCACGGTGGCTTCTCATATCCACCGTGATTTTGCAAAGACTACTACACTGCCATGGCATATAAGAATGAAAACTGCCATAGACACTGCGACTTCATTGTCTTATCTCCATGCTTCTGACATAATCCACCGCGACGTCAAAACCAACAACATTCTTCTTGACAACAGCTTTTGTGTTAAGGTTGCGGATTTCGGCCTCTCAAGACTATTTCCTAATGATGTCACACATGTCTCCACAGCACCACAAGGGACTCCAGGTTATGTTGACCCTGAATATCACCGCTGCTACCAGCTTACTAGCAAGAGTGATGTTTATAGTTTCGGAGTAGTGCTGGTTGAGCTTATATCTTCTAAGCCTGCTGTTGACATGGGCAGGCATAAGGATGAGATCAATTTGTCTGAATTAGCCATAAAGAAGATACAAAACGGTGCGTTGAGTGAGTTGGTTGATCCTAATCTTGATTTTGATTCGGATAATGAGGTTAAGAGGATGATAGTGTCAGTGGCAGAGTTGGCTTTTCAGTGTTTGCAACGGGACAGGGAACTTAGACCTACGATGGATGAGGTTTTGAAGGTGTTGATCACAATTGAAAGTGGTAAGGCTAAAGATGAACACATTGAAGAAGTAGATATACATACATCATCACTCCCATCCCCAGCTTCACCAGATTTGGATGAAGTTGGATTACTGAAGGCAAGGATTCTACTGCCATCACCAAAAGCAGTAACTGATAGATGGAATAGTGAATCAACTACATCTAGTTTCAGTGCTTAG 2004 0.4242 MALPYYLLLLFLLIILFPVRHAVNDKQHKCPRSFERGSRGRFQFPYTKTELPHCGLLFIHGCDDPNHYSIKTIQLEKNGTRLVLTGSIDSNSSIITVYDADFHSRLEQNKCHALGTTYTLPPPSPLLSVYIQYNVTLFRCNKKLRIKRPSYYGNQTCGDYDIYYDKNNTSPTIHDAGGIFSHCSLLHFATKDDINTTDVLSFVSSEIELEVVLSPDCDDCFNRKRGQCQLDTNNKFYCDKVPKDDNKKALKLALGIGLGMSSLLGILIIGCFLTRRYQRKHVPSDLQYLSKSTYSDANYASTNPEAESRRGYFGVPLFSYKELKEATNNFHHTTQLGQGGFGTVYYGKLRDGRDVAVKRLYEHNYRRMEQFMNEIVILARLRHKNLVSLYGYCTSPHRSELLLVYEFVQNGTVASHIHRDFAKTTTLPWHIRMKTAIDTATSLSYLHASDIIHRDVKTNNILLDNSFCVKVADFGLSRLFPNDVTHVSTAPQGTPGYVDPEYHRCYQLTSKSDVYSFGVVLVELISSKPAVDMGRHKDEINLSELAIKKIQNGALSELVDPNLDFDSDNEVKRMIVSVAELAFQCLQRDRELRPTMDEVLKVLITIESGKAKDEHIEEVDIHTSSLPSPASPDLDEVGLLKARILLPSPKAVTDRWNSESTTSSFSA 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30925g00001 667 ProSiteProfiles Protein kinase domain profile. 330 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30925g00001 667 Gene3D Transferase(Phosphotransferase) domain 1 408 620 - -
Stsc30925g00001 667 SMART serkin_6 330 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30925g00001 667 FunFam Wall-associated receptor kinase-like 20 408 616 - -
Stsc30925g00001 667 SUPERFAMILY Protein kinase-like (PK-like) 310 604 IPR011009 -
Stsc30925g00001 667 Pfam Protein kinase domain 330 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30925g00001 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Stsc30925g00001 667 FunFam serine/threonine-protein kinase PBS1-like 297 407 - -
Stsc30925g00001 667 CDD STKc_IRAK 336 603 - -
Stsc30925g00001 667 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Stsc30925g00001 667 Gene3D Phosphorylase Kinase; domain 1 301 407 - -
Stsc30925g00001 667 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 8 660 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30925g00001 Stsc-Chr30925 5659 8049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30925g00001 42 667 Receptor kinase-like Gene Family AT1G25390 48.183 2.84e-171 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc30925g00001 Pkinase 2.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30925g00001 - - gmx:100791822 767.303