Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30916g00003 ATGAATGATCTAGAAATAGATTATTCAAAATATGGGACTCCTGTGAATAGAAAGGGCAAACATGATCAGAGAGATGAGAAACCAGTTGTAAGAATAAATAATAATGCTGGAAAAAGATTGGCATTGCTTTCTTCTGAGCCTTGTAAGAAACTGAGAGGTGAGAGCTCTACTCAAAGAAAGAGAACATCATCTTTGAATTGGCCAAAGCAACCTGAAGCTCAGGAAGTAACTAAGAAATTCATCTCATGTAACCCTTTCTTCACGCTGTTCATAACGCCTAATTGCCTCAAAGAATACCAACTGAATGTACCGGTGACTTTGAAAGGTTACATTGAGAATGAGATGAAGGATGTGACTCTTAAGGTTGGGAAAAGAGAATGGCAAGTAAAGTTGCTTCCCCGTCGCACCACTCGCCGCCGCCTCTCGGGTGGTTGGTCCTTGTTTACGCGCGAGGGCGGATTGCAAGCTGAAGACGTTTGTGTCTTTGAACTGATTAACATGGAAGATTTAGTTTTTAAGGTTCATATTTTCAAAAGGGAAGGATAG 546 0.4084 MNDLEIDYSKYGTPVNRKGKHDQRDEKPVVRINNNAGKRLALLSSEPCKKLRGESSTQRKRTSSLNWPKQPEAQEVTKKFISCNPFFTLFITPNCLKEYQLNVPVTLKGYIENEMKDVTLKVGKREWQVKLLPRRTTRRRLSGGWSLFTREGGLQAEDVCVFELINMEDLVFKVHIFKREG 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30916g00003 181 SMART B3_2 86 180 IPR003340 GO:0003677
Stsc30916g00003 181 Gene3D - 68 180 IPR015300 -
Stsc30916g00003 181 Pfam B3 DNA binding domain 86 179 IPR003340 GO:0003677
Stsc30916g00003 181 CDD B3_DNA 85 178 IPR003340 GO:0003677
Stsc30916g00003 181 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 60 179 IPR044837 -
Stsc30916g00003 181 MobiDBLite consensus disorder prediction 14 30 - -
Stsc30916g00003 181 MobiDBLite consensus disorder prediction 1 30 - -
Stsc30916g00003 181 MobiDBLite consensus disorder prediction 50 69 - -
Stsc30916g00003 181 ProSiteProfiles B3 DNA-binding domain profile. 86 180 IPR003340 GO:0003677
Stsc30916g00003 181 SUPERFAMILY DNA-binding pseudobarrel domain 83 180 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30916g00003 Stsc-Chr30916 11189 12648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30916g00003 54 178 REM Transcription Factor Family AT1G49480 31.008 1.79e-13 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc30916g00003 B3 8.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30916g00003 - - vvo:131658695 140.969