Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30913g00008 ATGGCGCATCGAAGAACGAAGCTGCTTTTCATTCTTCTATGCGCTCTCTGCTATGCTCTCAATGCTATCGCCGGAAAGAGCTACTATGATATACTTCAGGTTTCCAAGGGTGCTTCGGAGGAGCAGATAAAGAGGGCGTATAGGAAGCTTGCATTGAAGTTCCACCCTGATAAGAACCAGGGCAACGAAGAAGCTAATAAGAAATTTGCTGAAATTAGCAATGCATATGAAGTGTTGTCGGATAGCGAGAAGAGAAGCATTTATGACAGATATGGTGAGGAGGGTTTGAAGCAGCATGCTGCCAGTGGTGGCAGAGGTGGTGGAATGGGAATGAACATCCAAGACATTTTTAGCTCTTTCTTTGGTGGTGGTTCAATGGATGAGGAGGAGAAGATTGTGAAAGGTGATGATGTGATTGTTGAATTGGATGCAAGCCTTGAAGATTTGTACATGGGAGGTTCCTTGAAGGTTTGGAGGGAGAAAAATGTGTTAAAGCCAGCACCAGGAAAAAGACGCTGCAACTGTAGAAATGAGGTTTATCACAAGCAAATTGGGCCTGGGATGTTTCAGCAGATGACAGAGCAGGTCTGTGAGCAGTGTCCCAATGTCAAATATGTAAGGGAGGGCTATTTTATCACTGTTGATATAGAGAAAGGCATGCAAGATGGGCAGGAGGTACTATTTTATGAGGATGGTGAGCCTATCATAGACGGAGAATCTGGAGATTTAAGGTTCCGTATCCGAACTGCACCCCATGATGTCTTCAGAAGGGAAGGCAATGATTTGCACACCACTGTCACTATTACCCTGGTTCAAGCCCTTGTTGGATTTGAGAAGACCATCAAACATCTAGATGAGCATCTGGTGGACATTAGCACAAAGGCAATTACAAAGCCAAAGGAAGTGAAGAAGTTCAAAGGGGAGGGTATGCCATTGCATATGAGCATGAAGAAGGGAGATCTTTACGTCACTTTTGAGGTTCTATTCCCCACATCACTAACGGGGGAACAAAAGAAACAGATACAATCAATTCTTGGTTAG 1041 0.4419 MAHRRTKLLFILLCALCYALNAIAGKSYYDILQVSKGASEEQIKRAYRKLALKFHPDKNQGNEEANKKFAEISNAYEVLSDSEKRSIYDRYGEEGLKQHAASGGRGGGMGMNIQDIFSSFFGGGSMDEEEKIVKGDDVIVELDASLEDLYMGGSLKVWREKNVLKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCEQCPNVKYVREGYFITVDIEKGMQDGQEVLFYEDGEPIIDGESGDLRFRIRTAPHDVFRREGNDLHTTVTITLVQALVGFEKTIKHLDEHLVDISTKAITKPKEVKKFKGEGMPLHMSMKKGDLYVTFEVLFPTSLTGEQKKQIQSILG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30913g00008 346 SUPERFAMILY Chaperone J-domain 24 125 IPR036869 -
Stsc30913g00008 346 Pfam DnaJ C terminal domain 140 330 IPR002939 -
Stsc30913g00008 346 SUPERFAMILY HSP40/DnaJ peptide-binding domain 254 340 IPR008971 GO:0006457|GO:0051082
Stsc30913g00008 346 Gene3D - 252 330 - -
Stsc30913g00008 346 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 11 9 345 - -
Stsc30913g00008 346 CDD DnaJ_C 136 333 - -
Stsc30913g00008 346 ProSiteProfiles dnaJ domain profile. 27 92 IPR001623 -
Stsc30913g00008 346 FunFam DnaJ protein ERDJ3B 24 130 - -
Stsc30913g00008 346 CDD DnaJ 28 81 IPR001623 -
Stsc30913g00008 346 SMART dnaj_3 26 84 IPR001623 -
Stsc30913g00008 346 PRINTS DnaJ domain signature 47 62 IPR001623 -
Stsc30913g00008 346 PRINTS DnaJ domain signature 64 84 IPR001623 -
Stsc30913g00008 346 PRINTS DnaJ domain signature 84 103 IPR001623 -
Stsc30913g00008 346 PRINTS DnaJ domain signature 29 47 IPR001623 -
Stsc30913g00008 346 FunFam DnaJ subfamily B member 11 251 346 - -
Stsc30913g00008 346 ProSitePatterns Nt-dnaJ domain signature. 69 88 IPR018253 -
Stsc30913g00008 346 Gene3D - 131 251 - -
Stsc30913g00008 346 SUPERFAMILY HSP40/DnaJ peptide-binding domain 133 258 IPR008971 GO:0006457|GO:0051082
Stsc30913g00008 346 Gene3D DnaJ domain 24 130 IPR036869 -
Stsc30913g00008 346 Pfam DnaJ domain 28 89 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30913g00008 Stsc-Chr30913 26165 29956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30913g00008 26 91 C2H2 Transcription Factor Family AT1G74250 40.845 1.28e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30913g00008 K09517 - gmx:100799701 620.542