Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30913g00007 ATGGGAAGGGCTCCCTGTTGTGACAAGGTGGGACTCAACAAAGGCCGCTGGACACAGGAGGAGGATCAAATCTTGACAAACTACATTCGTGCCAATGGAGAAGGTTCTTGGAGGTCTTTGCCAAAGAATGCTGGGTTACTAAGATGTGGGAAGAGTTGCAGATTGAGATGGATCAACTATTTGAGAGCTGATCTCAAAAGAGGAAACATCTCCATCGAAGAGGAAGCTATCATCACAAAGTTGCATACTTCTTTTGGAAACAGGTGGTCCCTGATAGCCAGTCAATTGCCTGGAAGAACAGACAACGAGATCAAGAACTACTGGAACTCTCACTTGAGCAGGAAAGTTTACAGCTTCCCATCCCCAAACCACAAAGAAACCTCCGGTGCCACCGCCACCGCTACCAAGATCTTGGATACACCTCCGAAGCGTAAAGGTAGCGGCAAGACCAGCAGGTGGGCCATGAAGAAGAACAAAACCACCTCCTATTCCATCAATTCTTCGCCCCAAAAGCAAAAGAGGGAACAAAGTGGCGGAGAAGAAGAGGAGGGAAGAGGAGAAGTAAATGAGAAAATAATGGGAGCGAGGAGTGAGTGTGAGGGTGAGGGGAGCATTGATGATGGTGGGGTGTTGAGTTTTAATGAGATAATGGACGTTAGTTGCATGGAGCAGCTGGATGATCACGATCACCCATGTGGGCTCTTCACCGTTTCTGATTCACAAAGCAGCCACGTCATCCCAAATGATAATGACACAGCGTGTCCTAACAAATTGGTCAACGGGGACGCACATTCTAACTGCTCTTCTAATAATACTTCCTTGGATGATACCTATTGGGAGAGCGTCTTGCAGTTGAGCAATACCACCCATGACTCTTCCTGGGAACACACTACTGATGCTTTCTTCAACTGGCTATGGGAAGATCATGACTTGGACAAGCTTGGACAACTTGCTCAGATCACTAATAATATTGATGATGAACAAAATGCCATCATGCTTGATTCGTTTCTCTCCTCATGA 1020 0.4657 MGRAPCCDKVGLNKGRWTQEEDQILTNYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISIEEEAIITKLHTSFGNRWSLIASQLPGRTDNEIKNYWNSHLSRKVYSFPSPNHKETSGATATATKILDTPPKRKGSGKTSRWAMKKNKTTSYSINSSPQKQKREQSGGEEEEGRGEVNEKIMGARSECEGEGSIDDGGVLSFNEIMDVSCMEQLDDHDHPCGLFTVSDSQSSHVIPNDNDTACPNKLVNGDAHSNCSSNNTSLDDTYWESVLQLSNTTHDSSWEHTTDAFFNWLWEDHDLDKLGQLAQITNNIDDEQNAIMLDSFLSS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30913g00007 339 CDD SANT 16 61 IPR001005 -
Stsc30913g00007 339 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc30913g00007 339 MobiDBLite consensus disorder prediction 174 191 - -
Stsc30913g00007 339 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc30913g00007 339 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc30913g00007 339 FunFam Myb transcription factor 11 89 - -
Stsc30913g00007 339 CDD SANT 73 112 IPR001005 -
Stsc30913g00007 339 Gene3D - 14 66 - -
Stsc30913g00007 339 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 205 - -
Stsc30913g00007 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc30913g00007 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc30913g00007 339 Gene3D - 71 116 - -
Stsc30913g00007 339 SMART sant 66 114 IPR001005 -
Stsc30913g00007 339 SMART sant 13 63 IPR001005 -
Stsc30913g00007 339 MobiDBLite consensus disorder prediction 119 191 - -
Stsc30913g00007 339 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Stsc30913g00007 339 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc30913g00007 339 MobiDBLite consensus disorder prediction 153 173 - -
Stsc30913g00007 339 MobiDBLite consensus disorder prediction 119 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30913g00007 Stsc-Chr30913 21208 23472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30913g00007 1 182 MYB Transcription Factor Family AT2G47460 59.259 3.77e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30913g00007 Myb_DNA-binding 2.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30913g00007 K09422 - gmx:100814275 290.812