Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30913g00003 ATGGAAGTTCAAGTTGGAGCAGTATCAAACAGAAGCTGTAACGATTGCCACACAACCTCCACCCCTCTCTGGAGGGCTGGTCCAGATGGTCCTAGGTCTCTTTGCAATGCATGTGGGCTAAGGTACAGGAAAAGGAGGAAAGCCCTGGATAAAGGGGGAGCAAAGAAAAGCAGGAAGAGGAATAATAGAGCAACAAGTGGGCATGGCCATAGTCATGATCATGACGATGATGAAGTTGATTTTGGTTGCAACTTGGAGCCTTATACATTACATGGAAGAAGGCAATTCAAGTTAAAAGAGGAAGAAGAAGCTGCTATATTGTTGATGGCCCTTTCTTGTGCTTATTAG 348 0.4483 MEVQVGAVSNRSCNDCHTTSTPLWRAGPDGPRSLCNACGLRYRKRRKALDKGGAKKSRKRNNRATSGHGHSHDHDDDEVDFGCNLEPYTLHGRRQFKLKEEEEAAILLMALSCAY 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30913g00003 115 ProSitePatterns GATA-type zinc finger domain. 13 38 IPR000679 GO:0006355|GO:0043565
Stsc30913g00003 115 Gene3D - 9 71 IPR013088 GO:0006355|GO:0008270
Stsc30913g00003 115 PANTHER OS01G0976800 PROTEIN 9 114 - -
Stsc30913g00003 115 CDD ZnF_GATA 12 60 IPR000679 GO:0006355|GO:0043565
Stsc30913g00003 115 MobiDBLite consensus disorder prediction 46 78 - -
Stsc30913g00003 115 SMART GATA_3 7 66 IPR000679 GO:0006355|GO:0043565
Stsc30913g00003 115 Pfam GATA zinc finger 13 47 IPR000679 GO:0006355|GO:0043565
Stsc30913g00003 115 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 9 61 - -
Stsc30913g00003 115 MobiDBLite consensus disorder prediction 46 65 - -
Stsc30913g00003 115 ProSiteProfiles GATA-type zinc finger domain profile. 7 43 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30913g00003 Stsc-Chr30913 4284 4728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30913g00003 7 114 C2C2-Gata Transcription Factor Family AT3G06740 43.636 3.27e-24 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc30913g00003 GATA 4.9e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30913g00003 - - adu:107492392 200.675