Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30907g00002 ATGTCCACAAGGATTTGTAAGTTCTATGCCCGAGGAGCATGTTTGAAGGGGGAGCAGTGTGATTTTCATCACGAGAGAAAAGATACAGATGTTCCCGGGCAGCAGATTTGCACGTTCTATCAGAAAGGACTCTGTGCTTATGGTAGTCGGTGCAGATATAAACATGTCAACGTTTCTCAAGCATCATCTTCAGCAAATGGACGCCAATCTGTTGTTTTGGATTCTGTTGCAGCTCATACTATTCAAGGAGCATCGTCAAGTTGGGTTCCGAAAGCCACAAAGATATCTCCGTCTGATAAGCATGCAAGGAGTTCACTAAATAAACATCAAGACTATCTAAATAAGGTTAATGATAGTGAATCAAGTACTAGTAGTGCGATACCATCTGAGCATCTTCTTTGTACATTTGCTGCTGCAAACTGCCCTCTTGGAGATAAATGTTCTCGTGTTCATGGAAATCAATGTTTATACTGTAGAAAATATTGCTTGCATCCTACTGATCGAAGGATAAAAGAGAATCATTTGCGGACTTGCGAGAAAAAGGAAAAATACCTGCTGAGTTTGAAAGATAGTCAAGAAATAGAATGCAATGTTTGTCTTGAGCGTGTTCTATCAAAACCTAAGCCATCTGAATGTAAGTTTGGGTTGCTTCCGGAATGCGACCATGCTTTTTGTATATGCTGTATCCGTAACTGGCGTAGTAGTGCCCCAAGCTCTGGAATGGACTTCAATAATACAAATAATACAGTGAGAACCTGCCCTGTGTGCCGAAAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTATTCTACAAAGGAAGATAAGCAGGAAATTATTGATAACTACAAGGCAAACTGCAAGTTAATCGATTGTAAGCATTTTAACTTTGGAGATGGAAACTGTCCATTTGGGACCAGTTGCTTCTACAAGCATACTGTGAAGCCTGGTTCATACACATGGATTCATAAGAGGCCACCACCTAGACGTAGACCAAACAATTTCGATATGTATGATGTATTGGATATTCTTGGTGGTGATGATTTATCAGGTGGGGAATCATATTCGATCATGAGGGACTCTGACTTGTTTGATGAGATGGACCGCTATGAAATGATGGCTATCTCAGACATTCTGGGCGCTGGACCAGGTCCTTGCCCTTTTGATTCTGATGAAGATGATGACTTGGATTTCCTTCGGATGGTTTCCTTGTCTGATGCATTGGCTTCTGGTGTGGATGACTTAAGCCCGGATGATTTTAGCAATGACGTGTTGAATCCAATGGAGGCGGCATTCTTTTCCATGTTGATGCATTCTAATATTGAAGAAGATGAAGAAGCCAGTGATGATGAAATTTACTAG 1362 0.4082 MSTRICKFYARGACLKGEQCDFHHERKDTDVPGQQICTFYQKGLCAYGSRCRYKHVNVSQASSSANGRQSVVLDSVAAHTIQGASSSWVPKATKISPSDKHARSSLNKHQDYLNKVNDSESSTSSAIPSEHLLCTFAAANCPLGDKCSRVHGNQCLYCRKYCLHPTDRRIKENHLRTCEKKEKYLLSLKDSQEIECNVCLERVLSKPKPSECKFGLLPECDHAFCICCIRNWRSSAPSSGMDFNNTNNTVRTCPVCRKLSYFVIPSGIWYSTKEDKQEIIDNYKANCKLIDCKHFNFGDGNCPFGTSCFYKHTVKPGSYTWIHKRPPPRRRPNNFDMYDVLDILGGDDLSGGESYSIMRDSDLFDEMDRYEMMAISDILGAGPGPCPFDSDEDDDLDFLRMVSLSDALASGVDDLSPDDFSNDVLNPMEAAFFSMLMHSNIEEDEEASDDEIY 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30907g00002 453 SUPERFAMILY RING/U-box 185 263 - -
Stsc30907g00002 453 MobiDBLite consensus disorder prediction 92 120 - -
Stsc30907g00002 453 Pfam CCCH-type zinc finger 36 55 IPR041367 -
Stsc30907g00002 453 ProSiteProfiles Zinc finger C3H1-type profile. 32 58 IPR000571 GO:0046872
Stsc30907g00002 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 268 IPR013083 -
Stsc30907g00002 453 SUPERFAMILY CCCH zinc finger 34 55 IPR036855 GO:0046872
Stsc30907g00002 453 ProSiteProfiles Zinc finger C3H1-type profile. 286 315 IPR000571 GO:0046872
Stsc30907g00002 453 PANTHER MAKORIN-RELATED 1 337 IPR045072 GO:0000209|GO:0061630
Stsc30907g00002 453 Pfam RNA-binding, Nab2-type zinc finger 5 24 - -
Stsc30907g00002 453 Pfam RNA-binding, Nab2-type zinc finger 134 152 - -
Stsc30907g00002 453 Pfam RNA-binding, Nab2-type zinc finger 291 312 - -
Stsc30907g00002 453 Pfam Zinc finger, C3HC4 type (RING finger) 196 256 IPR018957 GO:0046872
Stsc30907g00002 453 SMART ring_2 196 256 IPR001841 -
Stsc30907g00002 453 ProSiteProfiles Zinc finger RING-type profile. 196 257 IPR001841 -
Stsc30907g00002 453 CDD RING-HC_MKRN 194 257 - -
Stsc30907g00002 453 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Stsc30907g00002 453 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Stsc30907g00002 453 ProSitePatterns Zinc finger RING-type signature. 220 229 IPR017907 -
Stsc30907g00002 453 Gene3D - 1 71 - -
Stsc30907g00002 453 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Stsc30907g00002 453 SMART c3hfinal6 129 153 IPR000571 GO:0046872
Stsc30907g00002 453 SMART c3hfinal6 286 314 IPR000571 GO:0046872
Stsc30907g00002 453 SMART c3hfinal6 31 57 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30907g00002 Stsc-Chr30907 8683 14527 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc30907g00002 zf-C3HC4 3e-05 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30907g00002 K15687 - gmx:100788886 643.269