Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30906g00003 ATGACGGAGCCACCGTCGGATAGACGGTGTAAGCGCACCGCCGGCCCAAAGTGGCGGTGCAGCGAGGTGCAGTTGCCGGGGAAATCGTTCTGCGAGAAGCACTTGCAGCAGCTTGCGATTCAAAAGCAGAACAGAATTAAGAGCAACGAATCGGAGCGCAGGTCCAACAAGACCAAGAGGAGGCCATCGATTGCCGATGACGTCAGTGACGGATCCGAATTGGAAGTTTCCGAGTCCGAGTTGATTGAGAACTCCGTCGTGAAGAAGAACAAGACGAAGAAGAAGAAACTACTTGATCAAGGGAATGAGAATGATTGTGGTCTTCATGAGGACTCTGACAGGGGACTGATGAGCGTGTACCGTGTCAAGAAGGGTTCAGAAGTTGAAGGTAGCAAAAAAATGGCTTCATCCAGGAAAAGCAGGGAGGGTGGAAGTTTGATGTGTCATCAATGCCAGAGGAATGATAAGAGTGGCGTTGTCTTTTGCTCAGGATGCAACAAAAAACGCTACTGTTATGAATGCCTTGACAAGTGGTATCCAGGTAAAACCCGGGAGGAAGTTGAGAATGCATGTCCATTCTGTTCTGGCAATTGCAACTGCAAAGCCTGCTTGCGGGAGGTTCCAGTGCCTAAGGACCGAGAGGTAAATGCCAGTGTCAAATTAAATCGGCTGCTCTACTTAGTCTATAAAGCCTTGCCAGTTCTGAGGCAGATTCACAGGGAGCAAAGCTTAGAACTAGAGATTGAAGCCCAAATAAGAGGTGTTCAGCTTCAAGAAAAAAATATAGCAAGAACACGGCTAGACACACGTGAGCGCTTATACTGTGACAATTGCAATACATCAATAATTGGGTTTTACCGGAGCTGTCCCAATCCCAGTTGCTCTTTTGATCTATGTCTCATGTGTTGTCAAGAGCTTAGGGAGGGTTGCCAACCTGGAGGCATAGAAGCTGAAACATCCCTGGAACAATTTTCCGAGAGAGCTCGTAACCATGATTCATCAAGAACTAAGAGTAAAGAACAAAGCAAAAGTTATGGATGGGAGGGTCAGGTTGTGCCTACAAATTTTGATTTTCAAGCTGACATGTCCACCCCCTTCCCTGAATGGCATGCTAATACAGATGGTAACATTCCTTGTCCACCAAAACAACGTGGAGGTTGTGGTACTGCATTACTAGAATTGAGACGTACTTTCAAAGCTAATTGGGTAGTGAAATTGCTAAATAATGCTGAGGACCTCACCAGAGACTACATACCACCTGATGTTGATATTACTGAAAAGTGCTCTTTATGTCAGAAAAATACTATTGAAGGAAAAACCAACCTTGAAGTTCGGAGGGCAGCATTCAGGGATGACGATAATGATAATTTCATATTTAGCCCAAATGCCCTTGATATTTCTGATGATGAGATTGAGCATTTCCAGAGGCACTGGATGAGGGGGGAACCTGTTGTTGTGAGAAACGTTCTAGATAAGACATCAGGTCTTAGCTGGGAGCCAATGGTTATGTGGAGAGCTTTAAGGGAAACAGGCTCCAAAGTGAAGTTTAAAGAAGAAACTCGAAGTGTAAAAGCTATTGATTGCTTTGATTGGTGTGGGGTTGAGATCAATATTCACCAATTTTTCCAAGGCTACCTAGAGGGCCGGATGTATAAAAATGGGTGGCCAGAAATGCTGAAATTGAAAGATTGGCCCTCATCAACCAGTTTTGAAGAGCGCTTGCCCAGGCATGGCATGGAGTTCCTCATGGCACTCCCCTACAGGGATTACACTGATCCAAAATCCGGGACTTTGAATTTTGCATCTAAACTTCCTGATGACTCACTGAAGCCAGATTTAGGACCCAAAACATATATTGCTTATGGATTTTCTGATGAGCTTGGTAGAGGAGATTCTGTGACAAAGCTGCACTGTGACGTGTCTGATGCAGTCAATGTGCTGACTCATACTACCAATGTAAAGATAGCTCCTTGGCGGAGAGAAATAATAAAAGAACTGCAGAAGAAATATGCTGAAGAAGACTCTCGTGAACTTTTATGTGAAGCTTTAGGAGATGATGATGAAAGACCTAAATCTGAAGCATTGAAAGATGATCAGAAGACAGAGAAAGGAATTGGTAATATTTCACCAACTAACCACGTGGATCAGTGCATTCCATCTATAGCTGAAGGCAAGAGTCAGAAGTTAGAAACACATGATCTATCTGCAAGTAGCTTAACTAGTAATATGAGCATTAAGGAAGAAACAATGGGGATTGATTTTAAAGATGATAAGATGCCTGCTGATGCTGAGCTGAGAGAGTCAAAACAAGGCCTGGAGAAAGAATCTTTGAAAACTGAAAATGGAGCTGAGGTTCCCCTCGGTGGTGCTGTTTGGGACATCTTCCGCCGGCAAGATGTCCCTAAGCTAATTGAGTACTTAAGAAAGCACAAGAATGAATTCCGTCACATTAAAAATCATCCTGTAGAATCTGTTATTCATCCTGTTCATGATCAGACTCTATTTTTAAATGAGAGGCATAAGAAACAGCTGAAAAAGGAGTTCAATGTTGAACCCTGGACCTTTGAGCAAAACCTTGGGGAGGCTGTCTTCATTCCAGCAGGATGTCCTCACCAAGTGAGAAACAAACAATCTTGTATAAAGGTTGCTCTCGATTTCGTTTCTCCGGAAAATGTTGGAGAATGTTTGCGACTAACTGAAGAGTTTCGTTTGCTCCCAAAACACCACAGAGCCAAGGAGGACAAATTGGAGGTTAAGAAGATGACGCTTTATGCTGTCAGTAATACATTTAGACAAGTCCAAGAAATGATACCAACGAGTAAGATCGGTTCTAGTTAA 2838 0.4348 MTEPPSDRRCKRTAGPKWRCSEVQLPGKSFCEKHLQQLAIQKQNRIKSNESERRSNKTKRRPSIADDVSDGSELEVSESELIENSVVKKNKTKKKKLLDQGNENDCGLHEDSDRGLMSVYRVKKGSEVEGSKKMASSRKSREGGSLMCHQCQRNDKSGVVFCSGCNKKRYCYECLDKWYPGKTREEVENACPFCSGNCNCKACLREVPVPKDREVNASVKLNRLLYLVYKALPVLRQIHREQSLELEIEAQIRGVQLQEKNIARTRLDTRERLYCDNCNTSIIGFYRSCPNPSCSFDLCLMCCQELREGCQPGGIEAETSLEQFSERARNHDSSRTKSKEQSKSYGWEGQVVPTNFDFQADMSTPFPEWHANTDGNIPCPPKQRGGCGTALLELRRTFKANWVVKLLNNAEDLTRDYIPPDVDITEKCSLCQKNTIEGKTNLEVRRAAFRDDDNDNFIFSPNALDISDDEIEHFQRHWMRGEPVVVRNVLDKTSGLSWEPMVMWRALRETGSKVKFKEETRSVKAIDCFDWCGVEINIHQFFQGYLEGRMYKNGWPEMLKLKDWPSSTSFEERLPRHGMEFLMALPYRDYTDPKSGTLNFASKLPDDSLKPDLGPKTYIAYGFSDELGRGDSVTKLHCDVSDAVNVLTHTTNVKIAPWRREIIKELQKKYAEEDSRELLCEALGDDDERPKSEALKDDQKTEKGIGNISPTNHVDQCIPSIAEGKSQKLETHDLSASSLTSNMSIKEETMGIDFKDDKMPADAELRESKQGLEKESLKTENGAEVPLGGAVWDIFRRQDVPKLIEYLRKHKNEFRHIKNHPVESVIHPVHDQTLFLNERHKKQLKKEFNVEPWTFEQNLGEAVFIPAGCPHQVRNKQSCIKVALDFVSPENVGECLRLTEEFRLLPKHHRAKEDKLEVKKMTLYAVSNTFRQVQEMIPTSKIGSS 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30906g00003 945 MobiDBLite consensus disorder prediction 46 68 - -
Stsc30906g00003 945 ProSiteProfiles JmjC domain profile. 593 903 IPR003347 -
Stsc30906g00003 945 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 44 936 IPR045109 GO:0032454|GO:0033169
Stsc30906g00003 945 MobiDBLite consensus disorder prediction 40 75 - -
Stsc30906g00003 945 Gene3D Cupin 720 912 - -
Stsc30906g00003 945 Gene3D Cupin 462 704 - -
Stsc30906g00003 945 SMART cupin_9 574 903 IPR003347 -
Stsc30906g00003 945 MobiDBLite consensus disorder prediction 682 703 - -
Stsc30906g00003 945 Pfam WRC 7 44 IPR014977 -
Stsc30906g00003 945 FunFam Transcription factor jumonji (JmjC) domain-containing protein 725 912 - -
Stsc30906g00003 945 MobiDBLite consensus disorder prediction 682 715 - -
Stsc30906g00003 945 MobiDBLite consensus disorder prediction 324 342 - -
Stsc30906g00003 945 Pfam JmjC domain, hydroxylase 789 886 IPR003347 -
Stsc30906g00003 945 SUPERFAMILY Clavaminate synthase-like 471 921 - -
Stsc30906g00003 945 MobiDBLite consensus disorder prediction 324 344 - -
Stsc30906g00003 945 ProSiteProfiles WRC domain profile. 4 51 IPR014977 -
Stsc30906g00003 945 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 146 208 IPR018866 -
Stsc30906g00003 945 ProSiteProfiles Zinc finger RING-type profile. 148 195 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30906g00003 Stsc-Chr30906 12117 17527 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc30906g00003 JmjC 6e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30906g00003 K15601 - cave:132187182 1100.89