Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30906g00002 ATGGATTTGGAACCCGAAACTCGACGTAAAATCGAGGACATGGTGATGGATTTACTCAAGCAATCCAACATAGAAGAGACTACTGAATTCAGCATCCGAGTCGCCGCCTCCGAGCGACTCGGCATCGATCTCTCCGACCCGCACCGCAAGCAGCTCGTCAGAAACGTCGTTGAGTCTTATCTTCTATCCTTCGCTGCCGAAGACGCCACCGTTGTAGCAGAACAGAAACCGCCGGAACTCATCGCTGCTCCGGAGGATCCCAGAGAAGCGGCGTTACAGTTAGCGAAGCCAAAGTGCGAAGTTAAAGATGACTGTGACTTCGTCACTTTCCAGCTGTCAAACAAGAGGAATGTGGTGGTTAAAAAGTTCAAAGGGACAACATTGGTGTCCATTAGGGAGTTTTTCCAGAAAGATGGAAAACAGATTCCCACTTCTAAAGGGATAAGTTTATCATCTGAACAATGGTCAACCTTCAAGAAGAGTGTGCCAGCTATAGAGGAAGCTATTGCAAAGATGGAAGGAAAGATGAAATCTGAGCTTCATGGGAAGAAAAATGGAGATTTCTATAACTCAATTGTTGATGCGACTCCTCTTGAGCATGTCCCTGTTGAGGTCAGCCGTTTTGATGGGAAAAATTATCAATTATGGGCTCAGCAGATGGAATCACTTTTGAAACAGCTAAAGATTGATTATGTGCTTACTGAACCTAGCCCAAATGCCGTGCTTGGTGAAAATTCTAGTGCTGAAGAAATTGCTAGAACCAAGAATGCAGAAAGGAGATGGGTGAATGATGATTTAATGTGTTGCCGCAATATCTTGACCCATTTATCTGATAGTCTATTCGGTCTCTACGCAAACAGAAAAATGAGTGCTAAGGAGTTATGGGAAGATTTAAAATTGGTTTATCTGTATGAGGAACATGGAAGCAAGGGAGAGCAAGTGAAAAAGTATCTTGAGTTTCAGATGGTAGACAATAGAGCAATTGTTGAGCAAATCCTAGAATTTAATAGCATCGCAGATTCACTTGTTTCTGCTGGAATGTTTCTGGATGAAAACTTTCATGTGAGTGCCATCCTTTCAAAGCTTCCACTGTCTTGGAAGGACTTCTGCATCAAGTCAATGCGTGAGGAGTATCTTCCTGTATGGAGGCTAATTGATTGTATACGGATGGAGGAAGAATCTCGCAAAGGATTCAAACGAGTTGGTGAACCTTATAGTAGGAATAAGTTCCCAGGCATGCATAGGAATAAGTCAGATAGTAATGGCAAGAGCATAGCCTGTTATATTTGTGGCAAGAAGGGGCATCTTTCTAAACACTGCCGGAGAAGATTTGACAAACAAGCTAATGAAAGAAGGGCAGAAGATGTGTGTATACCTCAAGAAGTTAACATGGTGGGGGGTTATTAG 1407 0.43 MDLEPETRRKIEDMVMDLLKQSNIEETTEFSIRVAASERLGIDLSDPHRKQLVRNVVESYLLSFAAEDATVVAEQKPPELIAAPEDPREAALQLAKPKCEVKDDCDFVTFQLSNKRNVVVKKFKGTTLVSIREFFQKDGKQIPTSKGISLSSEQWSTFKKSVPAIEEAIAKMEGKMKSELHGKKNGDFYNSIVDATPLEHVPVEVSRFDGKNYQLWAQQMESLLKQLKIDYVLTEPSPNAVLGENSSAEEIARTKNAERRWVNDDLMCCRNILTHLSDSLFGLYANRKMSAKELWEDLKLVYLYEEHGSKGEQVKKYLEFQMVDNRAIVEQILEFNSIADSLVSAGMFLDENFHVSAILSKLPLSWKDFCIKSMREEYLPVWRLIDCIRMEEESRKGFKRVGEPYSRNKFPGMHRNKSDSNGKSIACYICGKKGHLSKHCRRRFDKQANERRAEDVCIPQEVNMVGGY 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30906g00002 468 FunFam RNA polymerase II transcriptional coactivator KELP 101 173 - -
Stsc30906g00002 468 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 5 62 IPR014876 -
Stsc30906g00002 468 SUPERFAMILY ssDNA-binding transcriptional regulator domain 109 171 IPR009044 GO:0003677|GO:0006355
Stsc30906g00002 468 Pfam gag-polypeptide of LTR copia-type 261 396 - -
Stsc30906g00002 468 Pfam Transcriptional Coactivator p15 (PC4) 110 160 IPR003173 GO:0003677|GO:0006355
Stsc30906g00002 468 Gene3D - 419 465 - -
Stsc30906g00002 468 ProSiteProfiles Zinc finger CCHC-type profile. 427 442 IPR001878 GO:0003676|GO:0008270
Stsc30906g00002 468 Gene3D Transcriptional Coactivator Pc4; Chain A 101 177 IPR009044 GO:0003677|GO:0006355
Stsc30906g00002 468 SUPERFAMILY Retrovirus zinc finger-like domains 409 448 IPR036875 GO:0003676|GO:0008270
Stsc30906g00002 468 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 5 174 IPR045125 GO:0003713|GO:0060261
Stsc30906g00002 468 Pfam DEK C terminal domain 7 61 IPR014876 -
Stsc30906g00002 468 SMART c2hcfinal6 426 442 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30906g00002 Stsc-Chr30906 8166 10911 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Stsc30906g00002 Retrotran_gag_2 1.8e-13 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30906g00002 - - gmx:100800963 543.117