Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30902g00001 ATGTGCGAGATTAACGTGAACCTTCATGTTACCACACATGTTGTTCTTAATTGTCATGGTAATAATAATAATAATGCTATTGTTGTAGCAACCAAACTCGTGAATCTGTTGCCGAGACCAAAGATTGATGAATGTCATGATTTTGTGGAGCAACAATGTGCTATTTGCTTAGAAGAGTTGTGCCATAATATTGATGGTTCAAGTGCTGAGGTTGTTGTTGCCATTAATTGCTCCCATGTTTTCCATGAACGTTGTATTTTTCGATGGCTCCTGCGTTGTATCAACCTTAAAGCATCTTATACTTGTCCTTTATGTCGCGACCCCATTATTGTTTCAACTTCAGAAGGAGAAGGAGATGGAGGTTTTAGGCATAATCACTACTAG 384 0.3828 MCEINVNLHVTTHVVLNCHGNNNNNAIVVATKLVNLLPRPKIDECHDFVEQQCAICLEELCHNIDGSSAEVVVAINCSHVFHERCIFRWLLRCINLKASYTCPLCRDPIIVSTSEGEGDGGFRHNHY 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30902g00001 127 ProSiteProfiles Zinc finger RING-type profile. 53 106 IPR001841 -
Stsc30902g00001 127 SMART ring_2 53 105 IPR001841 -
Stsc30902g00001 127 PANTHER RING ZINC FINGER PROTEIN-RELATED 39 113 - -
Stsc30902g00001 127 SUPERFAMILY RING/U-box 39 112 - -
Stsc30902g00001 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 119 IPR013083 -
Stsc30902g00001 127 Pfam RING-H2 zinc finger domain 52 106 IPR024766 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30902g00001 Stsc-Chr30902 727 1110 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30902g00001 52 109 C3H Transcription Factor Family AT5G05530 43.103 2.69e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30902g00001 - K11982 adu:110273516 112.849