Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc308g00003 ATGGCTCTTTCTTCAATAAGAAAGGGGAAAGAGTCACCAACCATGGCACTCACTTTCTTGTTGATGCTTCTCCTAGGACACTTGAGTAATATGGCCTCTGCTTCTCGCACCCGTATGGGAGGCTCAGCGTGCCTCAAGGTTTCACCTTCAGAGTTCGTCGGTGCTGTTAGGGAAGTTATTCACCTCTTGGGAGATGTTACTTCCATCTTGTCCAAGTTTAGCGGTGGCTTTGGTAATTTCCGTCTCGCCAACGCCATTCTTGACTGTGTTGATTTGTTGGACATGTCCTCCGATGAGCTTAACTGGTCTGTCTCCGCTACTCAAAACCCCAAAGGAAAACACAACAGTACAGGAAACGTAGGATCCGATTTGAGGACATGGCTAAGTGCTGTCCTGGCAAATCCAGAGACATGCCTCGACGGATTCGAAGGCACAAACAGTATCGTCAAAGGGTTAGTCTCCACCGGCCTTGGACAAGTGACATCGCTGGTGAAGAATCTCCTCGCAAAGGTTGATGTTCCCCACCATGATGTTTCCCACAGTGCCGGCGAGGATCGGTTTCCCTCGTGGGTGAAGCCGGGGGATAGGAAGCTTCTGCAGGCAAATGGAGTTGCTGCGGATGCTGTGGTGGCTGCAGATGGAACCGGAAAGTTCGCAAGTGTCATGGATGCTATTATAGCTGCGCCGGATTATAGCATGAAGAGATTTGTGATTTACGTGAAGAGAGGTGTTTACAATGAGAACGTGGAGATTAAAAAGAAGAAGTGGAATATCATGATGATCGGAGATGGTATCGGTGCCACTGTTATTACCGGCAACAGGAGTGTTGTTGACGGCTGGACAACTTTCCGATCGGCTACCTTTGCTGTAAGTGGAAGAGGGTTCATTGCACGGGACATTACTTTTCAGAACACAGCAGGGCCAGAGAAGCACCAAGCTGTGGCACTAAGATCCGATTCCGATCTTTCCGTCTTCTTTCGTTGTGGAATCTTGGGCTACCAAGACACCCTATACACTCACACAATGCGTCAATTCTTCAGAGAGTGCACAATTTCCGGCACAGTCGATTTCATCTTTGGCGACGCAACTGCTGTCTTCCAAAAATGCAATATACTTGTCAGAAAAGGGTTACAGAATCAAAAAAATACAGTCACCGCACATGGTAGAAAAGATCCTAACGAACCAACAGGCTTCTCGTTACAATTCTGTAACGTAACTGCTGATTCTGACCTCGTTTCTTTCGTTAACACCACCGAATCTTTCTTGGGGAGGCCGTGGAAAATGTATTCAAGAACAATTTTTATGCAAAATTATATAAGCGACGTTATAAGGCCGCAAGGGTGGTTGGAGTGGAACGGTAACTTTGCGTTGGATACACTATATTATGCTGAGTATATGAATACCGGTGCCGGTGCCGGTGTAGCTAACAGAGTCAAATGGTCCGGATACCATGTTTTGAATGGTTCAAATGAAGCCAGTAATTTTACTGTGGCACAGTTCATTGAAGGAAATTTATGGTTGCCTTCAACTGGTGTAGCATTCACAGCTGGATTAATGGTTTAA 1563 0.4645 MALSSIRKGKESPTMALTFLLMLLLGHLSNMASASRTRMGGSACLKVSPSEFVGAVREVIHLLGDVTSILSKFSGGFGNFRLANAILDCVDLLDMSSDELNWSVSATQNPKGKHNSTGNVGSDLRTWLSAVLANPETCLDGFEGTNSIVKGLVSTGLGQVTSLVKNLLAKVDVPHHDVSHSAGEDRFPSWVKPGDRKLLQANGVAADAVVAADGTGKFASVMDAIIAAPDYSMKRFVIYVKRGVYNENVEIKKKKWNIMMIGDGIGATVITGNRSVVDGWTTFRSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFFRCGILGYQDTLYTHTMRQFFRECTISGTVDFIFGDATAVFQKCNILVRKGLQNQKNTVTAHGRKDPNEPTGFSLQFCNVTADSDLVSFVNTTESFLGRPWKMYSRTIFMQNYISDVIRPQGWLEWNGNFALDTLYYAEYMNTGAGAGVANRVKWSGYHVLNGSNEASNFTVAQFIEGNLWLPSTGVAFTAGLMV 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc308g00003 520 FunFam Pectinesterase 201 518 - -
Stsc308g00003 520 PANTHER PECTINESTERASE 80 508 - -
Stsc308g00003 520 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 169 IPR035513 -
Stsc308g00003 520 SMART PMEI_2 35 170 IPR006501 GO:0004857
Stsc308g00003 520 Gene3D - 201 518 IPR012334 -
Stsc308g00003 520 CDD PMEI-like_4 42 169 - -
Stsc308g00003 520 Pfam Plant invertase/pectin methylesterase inhibitor 79 169 IPR006501 GO:0004857
Stsc308g00003 520 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Stsc308g00003 520 SUPERFAMILY Pectin lyase-like 204 517 IPR011050 -
Stsc308g00003 520 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Stsc308g00003 520 Pfam Pectinesterase 207 504 IPR000070 GO:0030599|GO:0042545
Stsc308g00003 520 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 173 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc308g00003 Stsc-Chr308 6361 9460 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc308g00003 16 519 Carbohydrate Esterase AT3G43270 64.672 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc308g00003 K01051 - gmx:100814987 760.755