Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc308g00002 ATGGCATTTCAAGATTTCGATGTCATCTCGGAACGTCGAAGAAATGAGCAGAAGGCAAAACTCAAGAAGAGGATCATTATCGGTGTTGTGGCCGCCGTCGTCCTTGTAGGCATAATCGGCGCAGTCTTCGCGGTGGTATTGCCAGGAAATGACAGCAGCAAAAGCAACAGCACTCCATCATGGCATTCTCCGTCGTCGTCGTCCTCGTCCTCGTCGTCACCGCCTTCAATCGCGAAAAATGAGAAGATGGTGGAACTTGTGTGCGATGGTGCCGAGTACAAGGACAAATGTGAAGAACCTCTGTCAGAAGCAATGAAGAACGACCCTTCCATGACGAACCCCAAGGATATTCTGAGGTACTACGCCAAATATGCAGAGGATGCAGTTAACGCTGCCTTCGCCAAAACCGAAACATTCAACTTCGAATCCCCAGAGGAGAAAGGAGCCTATGAAGATTGCAAGGAGATCTTCGCTGATGCCAAGACTGACCTAGAGGCCATCACGAACGGAATATCTGGTGACAACATTGATTTGAGGAACATCACGAAAAGCACTCCTGATTTGAACAGCTGGCTCAGTGCTATCATCACTTACCAACAAACTTGCATCGACGGTTTTCCCGAGGGTCAGTTGAAGACTGATCTTCAGAACCTCTTCAAGGACTCTAAGGAGTTCGTTAGCAACACACTTAACATTGTTTCCAAGGTTGGTAATTTGCTCTCCTCCTTTTCCATCCCCCGAAGTTTGGCCGAGGAGAAGCAACAGTCACCCCTCGATTTCTTGGACAAACGTGATGGCTTTCCTAACTGGCTTAGCCAGAAGGACAGGAGGATGTTGAAGGCTGCTGATAACAAGCCTAAAGCTAATGTCACCGTCGCCAAGGATGGCTCCGGGGACTTCAAAACCATCTCTGAGGCTTTGGCTGCCATGCCTAAGACATACGAAGGAAGGTATGTGATTTATGTTAAGGAAGGAGTATACGATGAGACAGTGATAATCACACAGAAAATGCAGAATGTAACCTTGTTTGGTGATGGTTCACAGAAGAGCATCATCACCGGCAACAAAAACTATAGGGATGGTACCAGGACCTTCCAAACTGCCTCATTTGCTGTGCTAGGAGATGGATTTATTGGAAAGTCGATGGGATTCAGGAACACGGCAGGGCCAGAAGGACACCAAGCTGTGGCTGCGAGAGTGCAAGCAGACCGCGCAGTGTTTGTGAACTGCCGCTTTGAGGGTTACCAAGACACACTATATGCCCAAACCCACAGGCAATTCTACAGGAGTTGCATCATTTCGGGCACCATCGATTTCATCTTCGGTGACGCCGCAGCAGTTTTCCAGAATTGTATCATGGCTATTAGGAAGCCAATGGACAACCAACAAAACATTATAACCGCACAAGGTAGAATTGATCCAAAACAAACCACTGGAATAGTCCTCCAGAAATGCACCATCAAGGCTGATGACTCACTTGCCCCTGTCAAGGCCCAGTTCAAGAACTACCTTGGTAGGCCATGGAAGGAATACTCTAGGACAGTTGTTATGGAATCCGAGATCGGCGATCTCATTCACCCGGAGGGATGGCTTCCTTGGGCCGGCGACTTCGCTCTTAATACACTCTACTATGCTGAGTATGCTAACACCGGACCTGGTGCCAAGACCACTGAAAGGGTTAAGTGGTCCACCTACCATGTCATCAACAAGCAAGAAGCTGCCCAGTTCACTGTCGCACAATTCTTGAAAGGAACTTGGGTCCAAGGCACCGGTGTTCCATCAATTCAAGGTTTCTATAACTAA 1803 0.4814 MAFQDFDVISERRRNEQKAKLKKRIIIGVVAAVVLVGIIGAVFAVVLPGNDSSKSNSTPSWHSPSSSSSSSSSPPSIAKNEKMVELVCDGAEYKDKCEEPLSEAMKNDPSMTNPKDILRYYAKYAEDAVNAAFAKTETFNFESPEEKGAYEDCKEIFADAKTDLEAITNGISGDNIDLRNITKSTPDLNSWLSAIITYQQTCIDGFPEGQLKTDLQNLFKDSKEFVSNTLNIVSKVGNLLSSFSIPRSLAEEKQQSPLDFLDKRDGFPNWLSQKDRRMLKAADNKPKANVTVAKDGSGDFKTISEALAAMPKTYEGRYVIYVKEGVYDETVIITQKMQNVTLFGDGSQKSIITGNKNYRDGTRTFQTASFAVLGDGFIGKSMGFRNTAGPEGHQAVAARVQADRAVFVNCRFEGYQDTLYAQTHRQFYRSCIISGTIDFIFGDAAAVFQNCIMAIRKPMDNQQNIITAQGRIDPKQTTGIVLQKCTIKADDSLAPVKAQFKNYLGRPWKEYSRTVVMESEIGDLIHPEGWLPWAGDFALNTLYYAEYANTGPGAKTTERVKWSTYHVINKQEAAQFTVAQFLKGTWVQGTGVPSIQGFYN 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc308g00002 600 CDD PMEI-like_3 86 235 - -
Stsc308g00002 600 FunFam Pectinesterase 283 598 - -
Stsc308g00002 600 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 82 236 IPR035513 -
Stsc308g00002 600 NCBIfam pectinesterase inhibitor domain 68 234 IPR006501 GO:0004857
Stsc308g00002 600 FunFam Pectinesterase 80 237 - -
Stsc308g00002 600 ProSitePatterns Pectinesterase signature 2. 433 442 IPR033131 -
Stsc308g00002 600 Coils Coil 600 600 - -
Stsc308g00002 600 PANTHER PECTINESTERASE 36 588 - -
Stsc308g00002 600 Gene3D Invertase/pectin methylesterase inhibitor family protein 80 237 IPR035513 -
Stsc308g00002 600 SMART PMEI_2 79 232 IPR006501 GO:0004857
Stsc308g00002 600 MobiDBLite consensus disorder prediction 54 77 - -
Stsc308g00002 600 Gene3D - 283 598 IPR012334 -
Stsc308g00002 600 Pfam Pectinesterase 289 584 IPR000070 GO:0030599|GO:0042545
Stsc308g00002 600 SUPERFAMILY Pectin lyase-like 286 596 IPR011050 -
Stsc308g00002 600 Pfam Plant invertase/pectin methylesterase inhibitor 84 232 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc308g00002 Stsc-Chr308 2491 4494 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc308g00002 1 600 Carbohydrate Esterase AT4G33230 48.298 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc308g00002 - - gmx:100784679 799.66