Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30894g00005 ATGGAAATGAAACAACAAGCATCACCAATGTTGGAGGCTCCATCATCATCATCAATGGAGAAAATAAACAACAATTGTGGATCATCCAACTTGGAGAAAAAAAAGAGGCTAACAAACGAACAGCTCGACTCGCTGGAGCGGAGCTTTCAGAAAGAAATAAAGTTGGATCCTGATCGGAAAATGAAGCTATCAAAGGAATTAGGGCTTCAACCTCGGCAAATTGCTGTTTGGTTTCAAAATAGGCGTGCAAGGTGGAAGGCAAAGCAACTTGAGCATTTGTATGATTCTCTCAAACAAGAATATGATGTTATCTTCAAGGAGAAACAAAAGCTTCAAGAAGAGGTAATGAAATTGAAGGGTATACTGAGAGATCAACAAGGTTGTAGAACAACTCAGGTATCAAATTACACTGAAATCTCTGGTGGTGGTGGTGGTGGTGATGAGACTACTGTAGAAAGCACTTCTGAGGCCCTACGCTGCTCCAACAAGAAATCATCATCAATTTCAAGAGCTGCTGCTTCCATTGTTCATCATCATAATCATAATAATGTCACAGATAATAATGGAAACTGCTCTTTCACTGTTGATGACTACAACTCTACAGTTCCAGTTCCAGTTCCAGTTCTTCCCTATTGGCCTGCTGTTCCTAATTATTACCCTTAA 663 0.3997 MEMKQQASPMLEAPSSSSMEKINNNCGSSNLEKKKRLTNEQLDSLERSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKAKQLEHLYDSLKQEYDVIFKEKQKLQEEVMKLKGILRDQQGCRTTQVSNYTEISGGGGGGDETTVESTSEALRCSNKKSSSISRAAASIVHHHNHNNVTDNNGNCSFTVDDYNSTVPVPVPVLPYWPAVPNYYP 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30894g00005 220 Coils Coil 80 114 - -
Stsc30894g00005 220 ProSitePatterns 'Homeobox' domain signature. 63 86 IPR017970 GO:0000981|GO:0006355
Stsc30894g00005 220 PRINTS Lambda-repressor HTH signature 68 84 IPR000047 GO:0003677
Stsc30894g00005 220 PRINTS Lambda-repressor HTH signature 59 68 IPR000047 GO:0003677
Stsc30894g00005 220 Gene3D - 25 96 - -
Stsc30894g00005 220 MobiDBLite consensus disorder prediction 1 32 - -
Stsc30894g00005 220 ProSiteProfiles 'Homeobox' domain profile. 28 88 IPR001356 GO:0003677
Stsc30894g00005 220 Pfam Homeodomain 33 86 IPR001356 GO:0003677
Stsc30894g00005 220 Pfam Homeobox associated leucine zipper 88 122 IPR003106 GO:0006355|GO:0043565
Stsc30894g00005 220 Coils Coil 28 48 - -
Stsc30894g00005 220 SUPERFAMILY Homeodomain-like 13 90 IPR009057 -
Stsc30894g00005 220 SMART HOX_1 30 92 IPR001356 GO:0003677
Stsc30894g00005 220 CDD homeodomain 33 89 IPR001356 GO:0003677
Stsc30894g00005 220 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 21 177 IPR045224 GO:0003700
Stsc30894g00005 220 FunFam Putative homeobox-leucine zipper protein ATHB-51 30 93 - -
Stsc30894g00005 220 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30894g00005 Stsc-Chr30894 15568 16902 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30894g00005 6 118 Homeobox Transcription Factor Family AT5G03790 66.667 3.89e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc30894g00005 Homeodomain 3.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30894g00005 - - gmx:100778007 245.743