Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30894g00003 ATGCAGAGGTATGTAGCTCTGAAGGTTCAGAAGAGTGCTCAGCATTACACTGAGGCTGCAATGGATGAGATAACGATTTTGCAACAGATTGCGGAGGGTGACCCGGAGGATAAGAAATGTGTGGTGAAGCTTTTGGACCATTTCAAGCATTCTGGTCCGAATGGACAGCATGTCTGCATGGTGTTTGAATACCTTGGCGATAATCTATTAACTCTTATAAAGTATTCTGATTATCGCGGGATGCCTATTAGTAGAGTTAAAGAGATATGCTTTCATATTTTGGTTGGATTGGATTACTTACATAAGCAGCTTTCTATTATACATACTGACTTGAAACCCGAAAACATCCTTCTTTTATCAGTAATTGATCCGTCTAAGGATCCTAGAAAGTCGGGCACTCCTCTCATTCTTCCAAATAGTAAAGATAAGGCAGTGTTAGAGTCTGGAGGTGCAAAAGACCTGAAAACATCAAATGGGGATTTGCTCAAGAATCATAAGAAAAAAATTAAAAGAAAAGCTAAGCAAGCGGCACATGGATGTGTGGAGAAGGAAGCTTCAGAAGGAGTTGATGGTAATCCTGAAACCAGTGGTGCCGTGGAATCATCTCCAAATGCAAGCTCTGTGATAGAACAAGCTTCAAGTTCTGCAGGCACCCATCGGTTATCAGATGCTGATGGAACAAGGTCAAAAGAACAGAGTGCTAAAAGAGGAAACCGTTCAATGAGACAAAAGCTGCTGGCATCAGCTGATCTGACGTGCAAGTTAGTTGACTTTGGTAATGCTTGCTGGACATATAAACAGTTTACAAATGATATCCAGACAAGACAATATCGGTGCCCGGAGGTGATCCTTGGGTCAAAGTATTCTACTTCTGCAGATCTTTGGTCCTTTGCTTGTATTTGTTTTGAGCTTGCCACGGGAGATGTTCTATTTGATCCTCACAGCGGCGACAACTTCGATCGGGATGAGGATCACTTGGCATTAATGATGGAACTTCTGGGAATGATGCCGCGGAAGATTGCACTAGGAGGCCGTTATTCTCGCGATTTCTTCAATAGATATGGGGATCTAAGGCATATCAGGCGATTACGGTTCTGGCCCTTGAACAAGGTTCTCATGGAGAAGTATGACTTCAGCGAGCGAGAAGCAAACGAAATGACTGAGTTTCTGGTTCCGATTCTAGACTTTGTTCCCGAGAAACGGCCCACTGCCGGACAGTGCCTTCAACATCCTTGGATCAATGCCGGTCCACTGCTTTTGGAGCCATCCATCACCTCTTCTAATCACAACCCGTCTGTAGCTGAGGCCGGCATTTCTGAGCAAAAGAAAAAGGACAAAGATGAAAGGGAGGCCATGGAGGCAGGTATGGGAAACATAGCAATCAACACAGATACCAAATCACTCATGGCTTCCCCATCTAAGAAACTCTTCCAAGGAAGCCATAGCCACAAGTAG 1455 0.4412 MQRYVALKVQKSAQHYTEAAMDEITILQQIAEGDPEDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGMPISRVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSVIDPSKDPRKSGTPLILPNSKDKAVLESGGAKDLKTSNGDLLKNHKKKIKRKAKQAAHGCVEKEASEGVDGNPETSGAVESSPNASSVIEQASSSAGTHRLSDADGTRSKEQSAKRGNRSMRQKLLASADLTCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEREANEMTEFLVPILDFVPEKRPTAGQCLQHPWINAGPLLLEPSITSSNHNPSVAEAGISEQKKKDKDEREAMEAGMGNIAINTDTKSLMASPSKKLFQGSHSHK 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30894g00003 484 SMART serkin_6 2 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30894g00003 484 Gene3D Transferase(Phosphotransferase) domain 1 33 119 - -
Stsc30894g00003 484 MobiDBLite consensus disorder prediction 147 241 - -
Stsc30894g00003 484 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 2 445 - -
Stsc30894g00003 484 ProSiteProfiles Protein kinase domain profile. 1 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30894g00003 484 CDD STKc_SRPK 3 413 - -
Stsc30894g00003 484 FunFam Serine/threonine-protein kinase SRPK-like protein 243 413 - -
Stsc30894g00003 484 MobiDBLite consensus disorder prediction 195 222 - -
Stsc30894g00003 484 Pfam Protein kinase domain 246 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30894g00003 484 Pfam Protein kinase domain 4 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30894g00003 484 MobiDBLite consensus disorder prediction 223 238 - -
Stsc30894g00003 484 MobiDBLite consensus disorder prediction 438 453 - -
Stsc30894g00003 484 MobiDBLite consensus disorder prediction 424 465 - -
Stsc30894g00003 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 106 118 IPR008271 GO:0004672|GO:0006468
Stsc30894g00003 484 Gene3D Phosphorylase Kinase; domain 1 2 64 - -
Stsc30894g00003 484 MobiDBLite consensus disorder prediction 175 189 - -
Stsc30894g00003 484 SUPERFAMILY Protein kinase-like (PK-like) 3 423 IPR011009 -
Stsc30894g00003 484 Gene3D Transferase(Phosphotransferase) domain 1 232 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30894g00003 Stsc-Chr30894 6083 10281 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30894g00003 3 475 EF-hand Containing Proteins AT5G22840 67.925 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Stsc30894g00003 Pkinase 6.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30894g00003 K08832 - gmx:100803070 842.802