Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30890g00006 ATGGCTTCCCTTCATCATCACACTGCTAGTGTTCCATATTCTGAAGCCAAACCAGACAACTCATCATCTGTTGTAGAGATTCATCATCATCATGATGATGAGGCCATCACTAATAATACTAGTGCTGCTGTGGCACAAATGGAAGCTTCAAGAAAGAGCAATCCTATCATTTTGACATGGAAGGATCTTTGGGTGAGTGCTTCCATGGGGAAGAGAGGGACCAAAGCTATCCTTCAGGGACTAACCGGTTATGCCAAACCGGGTCAGCTCTTGGCCATTATGGGTCCTTCTGGTTGTGGCAAGTCAACACTTCTTGATACGTTAGCAGGTAGATTGGGTTCAAACACAAGACAAAGAGGAGAGATTCTTGTCAATGGTCACAAACAGTCACTGACTTATGGAAGCTCGGCATATGTGACACAAGATGATACCTTGATGACATCGTTAACGGTGAGAGAGGCAGTGCACTACTCAGCCCAGCTTCAGCTACCTGATTCAATGTCAAAGGCAGAGAAGAAAGAGAGAGCAGAGTTCACAATAAGAGAGATGGGCTTGCAAGATGCCATGGACACTAGAATTGGAGGTTGGGGTTGCAAAGGAATCAGTGGTGGTCAGAAGAGGCGTGTCAGCATCTGCATTGAGATACTAACACGCCCAAAGCTTCTGTTTCTTGATGAGCCAACAAGTGGACTTGACAGTGCTGCCTCTTATTATGTCAGGAAAAGGATTAAATCCCTTGATGAAAAAGATGGGGTTCAAAGGTCAATTATTGCATCAATTCATCAGCCAAGTGCTGAAGTTTTTCAATTCTTTGATAATCTCTGTTTGCTATCTGATGGCAAAACAGTTTACTTTGGACCTGCTTCTTCTGCAATTCAGTTCTTCGCTTCAAATGGTTTTCCTTGTCCCGCTCTTCAAAATCCATCTGATCACTTACTGAAAACTATAAACAAAGACTTTGATCAGGAAATGGAAATGGAAGTGGGTTTAGAGGGGACGAATGGAGGATCATTACCTGCAGAAGCAGCAATTGGAATCCTTGTCAACTCATACAAATCCTCAGAACTGAACCAACAAGTTCAAAATGAAGTAGCTACCCTATCTAAAAAGGAAATTAGCTCATCAATAGAGAAGAAGAGTGGACATGCTAGCTTCCTTAGGCAGTGCATAGTTCTTACAAAAAGATCATCCGTGAACATGTCCCGTGACCTTGGCTATTATTGGCTACGTTTTGCTATATATATTACCTTGGCTATCAGTTTAGCAACTGTCTTCTATCGTTTAGACACAACTTATGCTTCAATGAAGGATAGAGGTTCACTTCTTTCATTTATATCTACATTCATAACATTCATGAGCATTGGTGGATTCCCTTCTTTTGTGGAAGACATGAAGGTATTTGAAAGAAAAAGGCTAAATGGGCATTATGGTGTGACAGCATTTGTGATGGGGAACACCTTATCAGCAATCCCATTTGTGTTGCTGCTTTCATTCATTCCAGGAGCTATAACATATTTCCCCCCTGGTCTTAGGAGTAGATACGATCACTTTCTTTACTTCATCTGTGTTCTGTTTTCATGCCTTATGTTAGTGGAGAGCCTCATGATGATAGTTGCAAGCTTGGTCCCAAACTACCTAATGGGAATCATAACCGGTGCCGGAATTCAAGGCATATTTATCTTAGTTGCTGGCTACTTCAAATTGCCAAACAAGATTCCAAAGCCATTTTGGAGATACCCTATGCACTACTTAGCATTCCACACTTATGCATTCCAAGGGATGTTCAAGAATGAATATGAAGGCTTGAAATTTGATGGAGGGTTGTTATCAGAGAAGAAATACATAACGGGTGAAGAGATTCTGAGGGACACGTGGCAAACGGACATGAGTTACTCGAAGTGGGTTGATCTTGGAATATTGGTAGGGATGATTGTGGTGTATCGTGTAACGTTTTTGGTTATTATAAAGACTACGGAGAAGGTGAAACCCATTGTTGGATCCTTCAACCTGCTGTTGTCATCGTCTCCCAACCAAACAATTCATGTCGTCGAAAATCCCAATGCTACTCCTTTGCATGTCGAGCTCGTATGA 2091 0.4189 MASLHHHTASVPYSEAKPDNSSSVVEIHHHHDDEAITNNTSAAVAQMEASRKSNPIILTWKDLWVSASMGKRGTKAILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGRLGSNTRQRGEILVNGHKQSLTYGSSAYVTQDDTLMTSLTVREAVHYSAQLQLPDSMSKAEKKERAEFTIREMGLQDAMDTRIGGWGCKGISGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYYVRKRIKSLDEKDGVQRSIIASIHQPSAEVFQFFDNLCLLSDGKTVYFGPASSAIQFFASNGFPCPALQNPSDHLLKTINKDFDQEMEMEVGLEGTNGGSLPAEAAIGILVNSYKSSELNQQVQNEVATLSKKEISSSIEKKSGHASFLRQCIVLTKRSSVNMSRDLGYYWLRFAIYITLAISLATVFYRLDTTYASMKDRGSLLSFISTFITFMSIGGFPSFVEDMKVFERKRLNGHYGVTAFVMGNTLSAIPFVLLLSFIPGAITYFPPGLRSRYDHFLYFICVLFSCLMLVESLMMIVASLVPNYLMGIITGAGIQGIFILVAGYFKLPNKIPKPFWRYPMHYLAFHTYAFQGMFKNEYEGLKFDGGLLSEKKYITGEEILRDTWQTDMSYSKWVDLGILVGMIVVYRVTFLVIIKTTEKVKPIVGSFNLLLSSSPNQTIHVVENPNATPLHVELV 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30890g00006 696 Gene3D - 57 296 IPR027417 -
Stsc30890g00006 696 ProSitePatterns ABC transporters family signature. 201 215 IPR017871 GO:0005524|GO:0016887
Stsc30890g00006 696 SMART AAA_5 87 281 IPR003593 GO:0016887
Stsc30890g00006 696 Pfam ABC transporter 79 229 IPR003439 GO:0005524
Stsc30890g00006 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 295 IPR027417 -
Stsc30890g00006 696 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 58 304 IPR003439 GO:0005524
Stsc30890g00006 696 MobiDBLite consensus disorder prediction 1 25 - -
Stsc30890g00006 696 Pfam ABC-2 type transporter 387 599 IPR013525 GO:0016020|GO:0140359
Stsc30890g00006 696 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 44 667 - -
Stsc30890g00006 696 FunFam ABC transporter G family member 11 56 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30890g00006 Stsc-Chr30890 22942 27048 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30890g00006 77 289 Calmodulin-binding Proteins AT2G36910 26.457 8.26e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30890g00006 K05681 - gmx:100794527 952.199