Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30890g00004 ATGGCATCTGAAAGTAGTATTGTGTTAGAGATTGAGCATGAGGAGGGAAATAAGTATAAGAGATCAGTGGAAATACAAGGTTTGAAGAAAGAGGAGGAGAAGGGTATGTGTATGACATGGAAGGATGTGTGGGTGAATGCATCAATGGGTAACAAAGGAAGCAAAGCAATTCTTGCCGGTCTAACCGGCTATGCCAAACCGGGCCAGTTACTGGCCATAATGGGTCCTTCCGGTTCTGGCAAGTCTACCCTTCTTGATGCCTTGGCAGGTAGATTAGATTCAAACACAAGACAAACAGGAGAGATTCTCATCAACGGTCGCAAAGAAGCACTTGCCTATGGAATCTCGGCATATGTGACACAAGATGATACCTTATTAACAACTTTAACGGTGAGAGAAGCAGTGCACTACTCAGCTCAACTTCAGTTACCTGATACCATGTCCAAGGCAGAGAAGAGAGAAAGAGCAGACATCACAATACGAGAGATGGGTCTGCAAGATGCCATTAACACTAGAATTGGAGGTTGGGGAATTAAGGGAATTAGTGGTGGTCAGAAGAGACGTGTCAGCATCTGCATTGAGATACTAACACGCCCAAGGCTCTTGTTTCTTGATGAACCAACAAGTGGACTTGACAGTGCTGCTTCCTATTATGTCATGAAAAGAATTGCTAACCTTGTTCAGAAAGATGGCATTCAAAGAACCGTTATTGCTTCAATACATCAACCAAGCACTGAAGTCTTTCAACTCTTCCATAACCTTTGCCTTTTGTCTTCTGGTAGAACCGTTTACTTTGGACCTGCCTCAACTGCTACTCAGTTCTTTGCTTCCAATGGTTTTCCATGTCCTGCACTCCAAAACCCTTCTGATCATTTACTCAAAACTATAAACAAGGATTTTGATCAGGATACTGACATGGGATTATCTGGCACTAGAACAATGCCAACTGAAGAAGCAGTTCGAATCCTTATAGACGCATATGAATCATCTGATATTAACCAACAAGTTCAACAACAAGTTGCAATGCTATCCACACAGGAGGAGACTAGATCAATAGATAACAAGAGAAGGCGTGCTGGTTTCCTTAATCAGTGCATTGTTCTTACCAAAATATCATGTGTGAACATGTTCCGTGATCTAGGATATTATTGGTTACGCCTTGGCATATACTTTGCGTTGGCCATAGCCACTGCCACAGTTTTCTATGATCTAGGCACAAGTTTCAGCACAATTCAAGACAGAGGAGCACTTCTCATGTTTGAATCTTCATTCATAACTTTCATGACCATTGGTGGATTCCCTTCCTTTGTGGAAGTCATGAAGGTATTTGAACGAGAAAGATTAAACGGGCATTATGGTGTTGTGGCATTTGTGATTGGGAACACAGTATCTAGTGTGCCATATTTGGTTCTAGTATCAGTGATTCCGGGTTCCATAGCTTATTACCTTCCACATCTTCAGAGAGGATTTGACCATTTTGTTTACTTCATATGTGTTCTGTTTTCTTGCCTCATGTTGGTTGAAAGCCTGATGATGATAGTGGCTAGTTTAGTCCCTAACTATCTAATGGGAATCATTAGCGGTGCCGGAATCCAAGGGATCATGATGCTGGCTGGAGGGTTCTTCAGGTTGCCCCATGATCTTCCCAAACCATTTTGGAGATACCCAATGTTCTATGTTGCATTTCATAGGTTTGCATTCCAGGGTTTGTACAAGAACGAGTTTGAAGGGCTAAGGTTTGCAAGAAATGATGGGCATGGCTCCTACATCAGTGGTGAGGAGATTCTGAGGGACACGTGGCAAGTTGACATGAGTTACTCAAAGTGGGTCGATCTTGGAATCTTGCTTGCCATGATTTTGGTGTACAGAGTTTTGTTCTTGTTGATCATCAAGGTTACTGAGAAGTTGAAGCCATTTGTTTTCTCATTCATTTCAAGGTCTCCCAAGCGAGCTACATCAGTGATGGAGAATAATCATCATAACTCTGCTCTAACTCATGAAGCATAA 2007 0.422 MASESSIVLEIEHEEGNKYKRSVEIQGLKKEEEKGMCMTWKDVWVNASMGNKGSKAILAGLTGYAKPGQLLAIMGPSGSGKSTLLDALAGRLDSNTRQTGEILINGRKEALAYGISAYVTQDDTLLTTLTVREAVHYSAQLQLPDTMSKAEKRERADITIREMGLQDAINTRIGGWGIKGISGGQKRRVSICIEILTRPRLLFLDEPTSGLDSAASYYVMKRIANLVQKDGIQRTVIASIHQPSTEVFQLFHNLCLLSSGRTVYFGPASTATQFFASNGFPCPALQNPSDHLLKTINKDFDQDTDMGLSGTRTMPTEEAVRILIDAYESSDINQQVQQQVAMLSTQEETRSIDNKRRRAGFLNQCIVLTKISCVNMFRDLGYYWLRLGIYFALAIATATVFYDLGTSFSTIQDRGALLMFESSFITFMTIGGFPSFVEVMKVFERERLNGHYGVVAFVIGNTVSSVPYLVLVSVIPGSIAYYLPHLQRGFDHFVYFICVLFSCLMLVESLMMIVASLVPNYLMGIISGAGIQGIMMLAGGFFRLPHDLPKPFWRYPMFYVAFHRFAFQGLYKNEFEGLRFARNDGHGSYISGEEILRDTWQVDMSYSKWVDLGILLAMILVYRVLFLLIIKVTEKLKPFVFSFISRSPKRATSVMENNHHNSALTHEA 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30890g00004 668 Gene3D - 26 279 IPR027417 -
Stsc30890g00004 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 275 IPR027417 -
Stsc30890g00004 668 SMART AAA_5 67 256 IPR003593 GO:0016887
Stsc30890g00004 668 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 26 646 - -
Stsc30890g00004 668 Pfam ABC-2 type transporter 241 352 IPR043926 GO:0140359
Stsc30890g00004 668 FunFam ABC transporter G family member 11 36 326 - -
Stsc30890g00004 668 Pfam ABC transporter 62 209 IPR003439 GO:0005524
Stsc30890g00004 668 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 38 284 IPR003439 GO:0005524
Stsc30890g00004 668 Pfam ABC-2 type transporter 364 575 IPR013525 GO:0016020|GO:0140359
Stsc30890g00004 668 ProSitePatterns ABC transporters family signature. 181 195 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30890g00004 Stsc-Chr30890 16385 19389 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30890g00004 57 269 Calmodulin-binding Proteins AT2G36910 26.484 4.52e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30890g00004 K05681 - gmx:100813462 987.638