Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30890g00003 ATGGATGATTTCTTTGCTCCACGTCCACTACTACTTCAACGTGCTGCTAGTGACTCTAGTTACTTCTATGCAACCAGACATGCATATGCACCCACCACAGACACTACCTCATCATCATCAAAACCGTCACAAATAATAAGGCAGCAGCAAAATGTTGTCCTAGAGATGGTTGATGAGACCACCACAACAAACAGTATTATTAATAAGGGTGTGTGTTTGACATGGAAGGATGTGTGGGTGACAGTTAAAAATGGAAGCAGAGTCATACTTGAGGGTGTCACTGGATATGCCAAACCAGGCCAACTATTAGCCATAATGGGTCCTTCTGGCTCTGGCAAGTCCACTCTTCTTGATACTTTAGCAGGGAGATTGGGTGCAGACACAAACCAAAATGGGGAGATTCTGATCAACGGTCAAAAACGATCACTGGCTTATGGAACCTCGGCATACGTGACACAAGATGATACCTTGTTAACAACCTTAACGGTGAGAGAAGCAGTGCACTATTCAGCTCAGCTTCAGTTACCTGATTCAATGTCAAAGGCAGAGAAGAAAGAGAGAGCAGAGTTCACAATAAGAGAGATGGGTTTGCAAGATGCCATGGACACTAGAATTGGAGGTTGGGGTTGCAAAGGAATCAGTGGTGGTCAGAAGAGGCGTGTCAGCATCTGCATTGAGATACTAACACGCCCAAAGCTTCTGTTTCTTGATGAACCAACCAGTGGACTTGATAGTGCAGCTTCCTATTATGTCATGAAAAGGATCAAATTCCTTGATGAAAAAGATGGGGCTCAAAGGTCAATTATTGCATCAATTCATCAGCCAAGTGCTGAAGTTTTTCAATTCTTTGACAATCTCTGTCTGCTATGTGCTGGCAAAACAGTTTACTTTGGTCCGGCTTCTGCTGCAATAGAGTTTTTTGCTTCAAATGGTTTTCCTTGTCCCACTCTCCAGAACCCATCTGATCATTTACTGAAAACTATAAACAAGGACTTTGATAAGGACACTGAAAGGGGAACAATACCTGCAGAAGAAGCAATTAGAATCCTTGTGAAGTCTTATAAATCATCTGACATTAGAAAACAAGTCCAACAAGAAATAGTGGAACAACTATCTCAAAAGGGCAACAGGTCAATAATAGAGAAGGAGAAGGGGCAAGGGCAAGCTGGGTTCCTTAATCAATGCATAGTTTTGACCAAAAGATCATTTGTAAACATGTTTAGAGATTTAGGGTACTACTGGTTACGCCTTGCCGTATATACTTTCTTGGCTTTATGTTTAGGGACGCTGTTCCATGGTTTGGGTTCAGATTATGGCTCAATTAAGGATAGGGCTTCACTCCTTACGTTTGTAGCTTCCTTTATAACTTTCATGAGTATAGGTGGATTCCCTTCCTTTGTGGAAGTCATGAAGGTATTTCTGCGAGAAAGACTAAATGGGCACTATGGTGTTACAACATTTGTGATTGGTGACACCATTTCAAGCATCCCTTTCTTGTTCCTGAATTCAATAATTCCAGGACTGATAGCATATTACCTAGCCGGTCTTCAACGTGGATTTGGCCACTTTGTGTACTTCATCTGTGTCTTATTTTCTTGCTTAACTTTAGTTGAAAGCCTTATGATGATAGTTGCAAGTATCGTCCCTAACTTCCTAATGGGAATCATAGCCGGTTCTGGAGTCCAAGGAATCATGATGCTGGCTGGAGGATTCTTCAAGTTGCCAGATGATCTTCCTAAGCCATTTTGGAGGGTCATCTTCTTGCTTATCATCAAAACTACTGAGAAATTGAAGCCCATTGTTTTATCATTAATGTCAAAGCAAAACACACAGGTCATGGAGGCTCCTAATGCCACTCCTTTCCATACTTAG 1872 0.4172 MDDFFAPRPLLLQRAASDSSYFYATRHAYAPTTDTTSSSSKPSQIIRQQQNVVLEMVDETTTTNSIINKGVCLTWKDVWVTVKNGSRVILEGVTGYAKPGQLLAIMGPSGSGKSTLLDTLAGRLGADTNQNGEILINGQKRSLAYGTSAYVTQDDTLLTTLTVREAVHYSAQLQLPDSMSKAEKKERAEFTIREMGLQDAMDTRIGGWGCKGISGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYYVMKRIKFLDEKDGAQRSIIASIHQPSAEVFQFFDNLCLLCAGKTVYFGPASAAIEFFASNGFPCPTLQNPSDHLLKTINKDFDKDTERGTIPAEEAIRILVKSYKSSDIRKQVQQEIVEQLSQKGNRSIIEKEKGQGQAGFLNQCIVLTKRSFVNMFRDLGYYWLRLAVYTFLALCLGTLFHGLGSDYGSIKDRASLLTFVASFITFMSIGGFPSFVEVMKVFLRERLNGHYGVTTFVIGDTISSIPFLFLNSIIPGLIAYYLAGLQRGFGHFVYFICVLFSCLTLVESLMMIVASIVPNFLMGIIAGSGVQGIMMLAGGFFKLPDDLPKPFWRVIFLLIIKTTEKLKPIVLSLMSKQNTQVMEAPNATPFHT 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30890g00003 623 Pfam ABC-2 type transporter 273 384 IPR043926 GO:0140359
Stsc30890g00003 623 Pfam ABC transporter 91 241 IPR003439 GO:0005524
Stsc30890g00003 623 FunFam ABC transporter G family member 11 71 353 - -
Stsc30890g00003 623 Gene3D - 71 346 IPR027417 -
Stsc30890g00003 623 SMART AAA_5 99 293 IPR003593 GO:0016887
Stsc30890g00003 623 ProSitePatterns ABC transporters family signature. 213 227 IPR017871 GO:0005524|GO:0016887
Stsc30890g00003 623 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 59 585 - -
Stsc30890g00003 623 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 73 316 IPR003439 GO:0005524
Stsc30890g00003 623 Pfam ABC-2 type transporter 394 589 IPR013525 GO:0016020|GO:0140359
Stsc30890g00003 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 308 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30890g00003 Stsc-Chr30890 12858 16278 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30890g00003 97 271 Calmodulin-binding Proteins AT2G36910 28.889 1.83e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30890g00003 K05681 - gmx:100813462 766.148