Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30890g00002 ATGGGAGGCATTCAGGGAGAAGAAAAGGAAGACGTAACACTAACATGGGAGAATCTCTGGGTGACTGTTGCAGATGGAAAGAAAAGGAAACCAATTCTGCAGGCTCTCACAGGCTATGCTCAACCCGGTAACCTTCTCGCTATATTGGGCCCTTCAGGCTGTGGCAAATCCACACTTCTTGATGCCTTATCAGGGAGATTAAGCTCTAATGTGAAACAGACAGGTAAAATTTTAATCAATGGCCACAAACAAGCACTCGCTTATGGAACTTCGGGATATGTAACACAAGATGATGCTATGCTGTCAACTTTAACCGCCGGGGAAACTTTATACTACTCAGCTCAGCTCCAGTTTCCAGATTCCATGTCCTGTGCTGAGAAGAAGGAACGAGCTGATATAACACTCAGGGAAATGGGCCTGCAAGATGCCATTAACACAAGGGTTGGAGGATGGGGTTCTAAAGGCCTAAGTGGAGGACAAAAGAGGAGACTCAGCATCTGCATTGAGATCCTAACACGCCCAAAGCTTCTGTTTCTTGATGAACCAACAAGTGGACTTGATAGTGCAGCTTCCTATTATGTCATGAAAAGAATTGCAAGCCTAAGCCTAAGGGATGGCATCCAAAGAACTATCATTGCATCAATCCATCAACCTAGTAGTGAAGTCTTTGAACTCTTCCATGATCTCTGTCTTCTATCTTCTGGCCAAACAGTATATTTTGGTCAAGCATCTGATGCAAATCAGTTTTTTGCTTCAAATGGCTTTCCTTGCCCAGCTCTCCACAATCCCTCTGATCATTTCTTAAGGATCATAAACAAAGATTTTGACCAAGATGTTGAAGAAGGTTTTGGATCAGGAGTTACTGCTGAAGTAGCAATTGACATCCTTGTAAAGTCATATAGATCATCTGAAACTAAAAACCAAGTTCAGAATGTAGTGGCAACAATAAGTGAAAGTAATTCAGGAGCAATTGGGAAGAAGAGGGTCAATGCCGCATTCCTCACTCAGTGCCTCGTTCTTATGAGAAGATCCTCGCTGCGATTGTTTCGCGACTTGAGCAATTACTGGCTACTTCTTGTTGTATTTATTGCAGTAGCTATTAGCATGGGTTCCATGTTCTATAACATTGGCTCAAGTAATGGATCAATTCAAGGCAGAGGATCTCTGCTTACTTTTTTGCTATCAACTCTAGCTTTCATGGCACTAATAGGCGGATTCGCTCCATTAATGGAGGAAATGAGGGTATTTGAACGAGAGAGACTAAATGGTCACTATGGTATCATTGCTTTTCTCATAGGCAAAATATTCTCAGCTCTTCCATATATGCTAATGATTTCTCTGATTCCTGGAGGAATAATATATTACCTCTCAGGGCTGCATAGAGGTTTAGAAAACTTTGTGTACTTTGCTGCTGTTCTGTTTGCCATTGTCCTTTGGGTTGAGAGCCTCATGATGGTTGTGGGGAGCATGTTCCCCAATTTCGTCGCCGGCATGAGCATTACCGGCGGAATTCAAGGACTAACCATCTTAACTGGTGGATTCTACAGGCTGCCAAATGATCTTCCAAAACCATTTTGGAAATACCCCTTTTACTACCTTTCTTTCCTCAAGTATGCCTTCCAAGGATCTTTCAAGAATGAATTTGAAGGCTTAACATTTACCATTGAACAAGGTGGGAGTGGCAAAACCATTGTTAGTGGCAGAGACATTTTGACAAACACATGGCAGATGGAAATGGGGCATTCGAAGTGGGTTGATCTTAGCATCATGTTTGGGATGATTGTTCTTTATAGGGTTGTGTTCTTGGCAATCACAAAAAGCAAGGAGAAGCTGAAACCTGTTGTTGCTTCCATTAACAATCCTCAAACAAAAGTATTCACAAGAGGGATTAGAATTAATGATAGAGCAAGTCCTGTATCTGAAAACCATGGCATCTAG 1938 0.4205 MGGIQGEEKEDVTLTWENLWVTVADGKKRKPILQALTGYAQPGNLLAILGPSGCGKSTLLDALSGRLSSNVKQTGKILINGHKQALAYGTSGYVTQDDAMLSTLTAGETLYYSAQLQFPDSMSCAEKKERADITLREMGLQDAINTRVGGWGSKGLSGGQKRRLSICIEILTRPKLLFLDEPTSGLDSAASYYVMKRIASLSLRDGIQRTIIASIHQPSSEVFELFHDLCLLSSGQTVYFGQASDANQFFASNGFPCPALHNPSDHFLRIINKDFDQDVEEGFGSGVTAEVAIDILVKSYRSSETKNQVQNVVATISESNSGAIGKKRVNAAFLTQCLVLMRRSSLRLFRDLSNYWLLLVVFIAVAISMGSMFYNIGSSNGSIQGRGSLLTFLLSTLAFMALIGGFAPLMEEMRVFERERLNGHYGIIAFLIGKIFSALPYMLMISLIPGGIIYYLSGLHRGLENFVYFAAVLFAIVLWVESLMMVVGSMFPNFVAGMSITGGIQGLTILTGGFYRLPNDLPKPFWKYPFYYLSFLKYAFQGSFKNEFEGLTFTIEQGGSGKTIVSGRDILTNTWQMEMGHSKWVDLSIMFGMIVLYRVVFLAITKSKEKLKPVVASINNPQTKVFTRGIRINDRASPVSENHGI 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30890g00002 645 ProSitePatterns ABC transporters family signature. 156 170 IPR017871 GO:0005524|GO:0016887
Stsc30890g00002 645 FunFam ABC transporter G family member 11 12 299 - -
Stsc30890g00002 645 CDD ABCG_EPDR 12 241 - -
Stsc30890g00002 645 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 8 619 - -
Stsc30890g00002 645 Pfam ABC-2 type transporter 216 282 IPR043926 GO:0140359
Stsc30890g00002 645 SMART AAA_5 42 235 IPR003593 GO:0016887
Stsc30890g00002 645 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 14 259 IPR003439 GO:0005524
Stsc30890g00002 645 Pfam ABC-2 type transporter 335 548 IPR013525 GO:0016020|GO:0140359
Stsc30890g00002 645 Pfam ABC transporter 35 184 IPR003439 GO:0005524
Stsc30890g00002 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 249 IPR027417 -
Stsc30890g00002 645 Gene3D - 4 254 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30890g00002 Stsc-Chr30890 8079 10644 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30890g00002 43 220 Calmodulin-binding Proteins AT2G36910 30.811 5.57e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30890g00002 K05681 - gmx:100790102 970.689