Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30888g00005 ATGCATGAGACTGCACCCCGCATGCAGACATTGGACTGGCCAGTCAACACGCTATTAGCGTGTAGGCCACAAGCCGCTGCTAACGAGCAGAATCTAACACGCTACCAGCGTGTAGCAGGTGTGTGGCAGGCGTCCGTCCGAGCTTGCAGCAACACACTATCAGCGTATAGTCAGCTGCACCCACAAATGAGAATTACACCCCTGATATCCATTATGCAGTTGAACAAGAACGAAAAGGTTGAGAGAGTGGTACAAGTGATGTCTCTCCTCCAAGAGGCGCAGAACAAAAGGGTGTCTTGCGTGAATAGAACATCCACTTCAACAACAGATAGGTTGGGAGTGGGTCAATCCATCCAAGATGGTGAGACCTTAGTTTCAATTGGTGGAAGCTTTGAACTGGGTTTCTTCAAGCCTGGAACTTCAACCAGTAGATATTTGGGTGTGTGGTACAGAGATGCAACAAGAAATCCCACAGTAGTGTGGGTTGCCAATAGAGAAAGACCCCTTCATACCACATCCGGAGTCTTGAAATTCAGTGTGAATGGAACTCTTCAACTTCTCAATGATGCAAACACTAGCGATAGTGTTTGGTCACCTAACATATCCTCCTCAGTCAAAGCCTCAAATAACTTTGTTTTACAACTCTTAGATTCGGGGAATCTTGTGGTCAAATACGGACAGGATGCTATAGAGGACAATTTTTTGTGGCAGAGTTTTGACTTTCCTTCTGATACATTCATGCCTGGAATGAAAGTTGGAGTAAACTTGGTTACTGGGCATGATATGTTTCTGTCGTGTTGGAAAAGCTCAGATGACCCTGCCATGGGAGAGTACGTTTTGAAAATTAAGCCCAGCGGCTATCCGCAACTAGTTCAAATGAAGGGATCGGTAGTAGTTACTAGAGCAGGGCCATGGAATGGTATTTCTTTTTCAGGGTATCCATCTGCCACCACGATATATAGCACCGATTTTGTAGTGAATGATGAAGAGATCTATTATCAGGTCAAAATGATTGACACATCCCTTTTCTCCATATACAAAACAATAACTTTTGGCAGTGGGGAAGTTTTGGTTTGGACGAGTAAAACAAGAACTCAGGTTAAAAATACTTCAACTGAGATAGCAGATCAGTGTGAAATTTATACCTTTTGTGGTTCAAATTCTGTATGCAATATGGATGGTAATGCTCCAACATGTGAATGTTTGAAAGCATATGTTTCCAAAGTTCCCAAACAATGGAATATGTCCGATTGGTCTAGTGCTTGCGTTAGAAAGAGTGCATTAGATTGTAATAGCACAGATGGATTCTTGACGTACAGAAACATGAAGTTGCCAGATACATCTTCTTCAATTTATAACAAGACAATGAATATCGAGGAATGTCGAGAATCCTGCCTGAAAAATTGTTCTTGCACAGCCTATGCAAATATGGATATCCGTAATGGAGGAAGTGGCTGCCTACTTTGGTTTGGTAATCTCATTGACATGAGGATGTTTTCTAAGGGAGGTCAAGACCTTTACATTAAAGTCCCTGGTTCAGAAGTAGCAGCATCTAATAGCCATGGGAACATACAGAATAAGAAGGTTGGAATCATAGTAGGTGCAGTTATTTTTGGAATAATCGCATTTGCTAGCACGATGATGATAATTAAAAATAGAGGTGTAGCAAGAAATATATGCAAAAATAAGCTCAATCAGGAAAATGTGGATCTACCGATATTCGACTTTTCAGTCATAGCTAAAGCTACAGGAAACTTTGCAAATAATAAAAAACTTGGTGAAGGTGGTTTTGGACCGGTCTATAAGGGCATACTTGAAGATGGCCGAGAATTAGCTGTAAAAAGACTGTCGAAAAGGTCTAGACAAGGGCAAGAAGAGTTCAAAAATGAAGTGGTGTTGATAGCTAAACTTCAACATCGTAATCTTGTGAAACTTCTTGGCTGCTGTATTCAAGATGAAGAAAAAATATTGATTTATGAGTACATGCCTAACAAAAGCTTAGACCACTTTATTTTTGATGAAAGTAGACGGAAGTTGCTAGATTGGTCAAAGCGTTTAAACATTATAAGCGGCATTGCTCGAGGACTTTTTTATCTTCATCAAGATTCTATATTGAGAATAATTCATAGAGATCTAAAAATCAGCAATATTTTGTTAGATGCAAATTTTAATCCCAAGATATCAGACTTCGGTTTAGCTCGAACGTTGTTAGATGATCAAGTTGAGGAAAATACAAATAAGATTGCTGGAACATACGGTTACATGCCACCTGAATATGCATTACGTGGACAATTCTCTATGAAATCAGATGTTTTTAGTTATGGTGTAATAATATTGGAGTTGATAAGTGGGAAGAAGAATAGAGAATTCTCAGACCCTGACAACTACCTTAATCTTCTTGGGCACGCATGGAGATTATGGACCAATGAGAGACCATTGGAAGTGTTGGATGAAGTATTAAGGGAAAAGTGCAACCCTGTTGAAGTCATAAGATGCATACAGATAGGTTTATTATGTGTACAACAGAGACCAGAAGATAGGCCTAATATGTTTTCCGTGGTTCTAATGTTAAATGGTGAGAAATTGTTACCCCAACCAAAATTTCCTGGATTTTATGCGAATTGTAGTGAGACACATAAAGAAGAATCTTTGTTGGCTGATGCAAAGTTCTCAACCAATGAAGTTTCCATCACGATGTTAGATGCCAGATAA 2712 0.3971 MHETAPRMQTLDWPVNTLLACRPQAAANEQNLTRYQRVAGVWQASVRACSNTLSAYSQLHPQMRITPLISIMQLNKNEKVERVVQVMSLLQEAQNKRVSCVNRTSTSTTDRLGVGQSIQDGETLVSIGGSFELGFFKPGTSTSRYLGVWYRDATRNPTVVWVANRERPLHTTSGVLKFSVNGTLQLLNDANTSDSVWSPNISSSVKASNNFVLQLLDSGNLVVKYGQDAIEDNFLWQSFDFPSDTFMPGMKVGVNLVTGHDMFLSCWKSSDDPAMGEYVLKIKPSGYPQLVQMKGSVVVTRAGPWNGISFSGYPSATTIYSTDFVVNDEEIYYQVKMIDTSLFSIYKTITFGSGEVLVWTSKTRTQVKNTSTEIADQCEIYTFCGSNSVCNMDGNAPTCECLKAYVSKVPKQWNMSDWSSACVRKSALDCNSTDGFLTYRNMKLPDTSSSIYNKTMNIEECRESCLKNCSCTAYANMDIRNGGSGCLLWFGNLIDMRMFSKGGQDLYIKVPGSEVAASNSHGNIQNKKVGIIVGAVIFGIIAFASTMMIIKNRGVARNICKNKLNQENVDLPIFDFSVIAKATGNFANNKKLGEGGFGPVYKGILEDGRELAVKRLSKRSRQGQEEFKNEVVLIAKLQHRNLVKLLGCCIQDEEKILIYEYMPNKSLDHFIFDESRRKLLDWSKRLNIISGIARGLFYLHQDSILRIIHRDLKISNILLDANFNPKISDFGLARTLLDDQVEENTNKIAGTYGYMPPEYALRGQFSMKSDVFSYGVIILELISGKKNREFSDPDNYLNLLGHAWRLWTNERPLEVLDEVLREKCNPVEVIRCIQIGLLCVQQRPEDRPNMFSVVLMLNGEKLLPQPKFPGFYANCSETHKEESLLADAKFSTNEVSITMLDAR 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30888g00005 903 Pfam Protein tyrosine and serine/threonine kinase 589 854 IPR001245 GO:0004672|GO:0006468
Stsc30888g00005 903 Gene3D Hepatocyte Growth Factor 427 507 - -
Stsc30888g00005 903 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 104 239 - -
Stsc30888g00005 903 Gene3D Phosphorylase Kinase; domain 1 548 661 - -
Stsc30888g00005 903 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 662 865 - -
Stsc30888g00005 903 CDD STKc_IRAK 592 859 - -
Stsc30888g00005 903 SMART ntp_6 431 510 IPR003609 -
Stsc30888g00005 903 ProSiteProfiles Protein kinase domain profile. 586 868 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30888g00005 903 Pfam PAN-like domain 430 496 IPR003609 -
Stsc30888g00005 903 ProSiteProfiles PAN/Apple domain profile. 430 511 IPR003609 -
Stsc30888g00005 903 SUPERFAMILY alpha-D-mannose-specific plant lectins 159 273 IPR036426 -
Stsc30888g00005 903 Gene3D - 104 239 IPR036426 -
Stsc30888g00005 903 Pfam S-locus glycoprotein domain 301 408 IPR000858 GO:0048544
Stsc30888g00005 903 Gene3D Transferase(Phosphotransferase) domain 1 662 863 - -
Stsc30888g00005 903 CDD B_lectin 116 242 IPR001480 -
Stsc30888g00005 903 PIRSF SRK 82 903 IPR024171 GO:0004674
Stsc30888g00005 903 SMART serkin_6 586 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30888g00005 903 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 551 661 - -
Stsc30888g00005 903 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 429 510 - -
Stsc30888g00005 903 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 109 844 - -
Stsc30888g00005 903 Pfam D-mannose binding lectin 158 268 IPR001480 -
Stsc30888g00005 903 CDD PAN_AP_plant 428 511 - -
Stsc30888g00005 903 ProSiteProfiles Bulb-type lectin domain profile. 109 236 IPR001480 -
Stsc30888g00005 903 SMART blect_4 115 242 IPR001480 -
Stsc30888g00005 903 ProSitePatterns Serine/Threonine protein kinases active-site signature. 707 719 IPR008271 GO:0004672|GO:0006468
Stsc30888g00005 903 SUPERFAMILY Protein kinase-like (PK-like) 569 867 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30888g00005 Stsc-Chr30888 12651 19137 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30888g00005 574 875 Receptor kinase-like Gene Family AT4G23140 58.576 4.99e-126 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc30888g00005 PK_Tyr_Ser-Thr 8.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30888g00005 - - adu:107464241 1063.14