Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30887g00001 ATGAATAGGGCCACAGAATGTGGGTACTGGAAGACTACCGGCAAGGATAGATCAGTTGAACACAGGAAGCATGTTGTGGGGATGATAAAAACCCTGGTGTTTCACAAGGGCAAAGCACCCAAGGGAGATCGGACTGATTGGGTGCTACATGAATACAGACTTCAAGATCAGGAGCTTGCTGACAAGGGTGTTCAACAGGATTCTTATGTGATATGTAAGGTGTACCAAAAGGATGGTCCTGGTCCTAGGAATGGTGCACAATACGGAAGGCCATTTGATGAGAAAGATTGGGATACAGAGGATGAAATTGACTGTGTAGAATCTGCACCTGTTGCTGCTCCACCTGCTGCAGTTCCTATAGAACCCGCATCATGTCATAGCTCCATTGTGAATGACGTGAATCCCTCTATGAGTGAATCCCATGGTTTGACCTATGTTTCCTGTTTAACAGGGCCAGTGCCTTCTGTCTCAGCACATCCTTCAGCTCCAAGTAATCAAGTTGATCTTGGCATTATACCAATGCTTCAATCCTCCATAGAGGATGACACAATGGCTCCTACTGAGAACAACATAGTTGAGAAGGTTGACAATCCTCCTGACGCAAACAATGCCGAAGTAACACCTTGCTTTGATCCCAATGAGATTTTTGGGGACCTGGGTGACCTTGATTGTTTGTTCAAAATGGTTGAAGATGGACATGGTTTTTGCTGTGGCCAAAATGGTGGATATACTGTGAACGAAATGCTTTCTGTGGGTGACGGGTTGTGTTTCCGTGATTCCCTGGACTACTTGGAGTTGGGTGACCTCGAGACCCCATTGTTATGGAATACTAATGAACAAGGAAATTGGAGCCAGGACAATAAATGA 867 0.4533 MNRATECGYWKTTGKDRSVEHRKHVVGMIKTLVFHKGKAPKGDRTDWVLHEYRLQDQELADKGVQQDSYVICKVYQKDGPGPRNGAQYGRPFDEKDWDTEDEIDCVESAPVAAPPAAVPIEPASCHSSIVNDVNPSMSESHGLTYVSCLTGPVPSVSAHPSAPSNQVDLGIIPMLQSSIEDDTMAPTENNIVEKVDNPPDANNAEVTPCFDPNEIFGDLGDLDCLFKMVEDGHGFCCGQNGGYTVNEMLSVGDGLCFRDSLDYLELGDLETPLLWNTNEQGNWSQDNK 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30887g00001 288 Gene3D NAC domain 1 79 IPR036093 GO:0003677|GO:0006355
Stsc30887g00001 288 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 137 - -
Stsc30887g00001 288 Pfam No apical meristem (NAM) protein 2 54 IPR003441 GO:0003677|GO:0006355
Stsc30887g00001 288 SUPERFAMILY NAC domain 2 77 IPR036093 GO:0003677|GO:0006355
Stsc30887g00001 288 ProSiteProfiles NAC domain profile. 1 77 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30887g00001 Stsc-Chr30887 1 2597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30887g00001 2 273 NAC Transcription Factor Family AT5G09330 36.996 7.81e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc30887g00001 NAM 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30887g00001 - - adu:107470479 486.108