Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30880g00003 ATGGGTGACGAGTTTCATTGTGGTGTGGTTATAAGAGAGTTTGATCCTAAGAGAGACAGAGAAAAAGTAGAAGAAGTAGAGAGAATATGTGAGGTTGGACCCAGTGGAAAGCTCTCTATCTTCACCGACCTCCTTGGTGACCCAATCTGCAGGGTCCGCCACTCACCTTCTTTCCTCATGCTGGTGGCGGAGATTGGAGATGAGATAGTGGGAATGATAAGGGGTTGCATCAAAACCATCACGTGCGGGAAGAAGCTCTCCAGAAACACCAAACACAGCAGCGACACTAGTAATAAGCATCTCCCTGTTTATGCTAAAGTCGCCTACATATTAGGCCTTCGAGTTTCTCCCTCTCACAGGAGAATGGGAATAGGATTAGAGCTGGTGCATCGAACGGAGGCATGGTTCAGAGATAATGGTGCTGAGTACTCCTACATGGCAACGGAAAACGACAATTTAGCATCCGTTAAACTCTTCACCGACAAATGCGGTTACACAAAGTTCCGTACTCCTTCCATCCTTGTCAACCCCGTTTTCGCTCACCGTCTCACCCTCTCCCCGAAGGTCAAGATCATCCACCTAGCCCCAGCCCAAGCAGAAGCCATCTACCGCCGCCGATTCGCCACCACCGAGTTCTTCCCCCGCGACATCGACGCCGTCCTCAACAACAAGCTCTCCCTCGGCACCTTCCTCGCCCTTCCCTCCGGCGCCACCTGGAAAGGCACGGATCACTTCCTCTCTGACCCACCCAACTCGTGGGCCATACTCAGCCTATGGAACTCCAAGGAAGTCTTCACGCTCCAGGTGCGTGGCGCGTCGCGCGTGAAACGCGCGCTTGCGATGACAACGCGCGTGGTTGACAAGGCTTTACCGTTTCTACGGTTACCGTCATTTCCGGATTTCTTTAGGCCGTTCGGGTTCCACTTCGTGTACGGGATTGGAGGTGAAGGTCCNNNNNNNNNNCCGCGCGTGGTTGACAAGGCTTTACCGTTTCTACGGTTACCGTCATTTCCGGATTTCTTTAGGCCGTTCGGGTTCCACTTCGTGTACGGGATTGGAGGTGAAGGTCCCGACGCGGTTAAGATGGTTAAGACTTTATGCGGTTTCGCGCATAACGTGGCCAAAGAACGTGGTTGCGGCGCCGTAGTTACCGAAGTGTCTGGTCAAGAACCGTTACGGTTTGGGATACCCCACTGGAAGAGGCTTTCTTGCGACGAGGACCTTTGGTGCATTAAGAGGCTAGGTGAGGATTACAGCGACGGTTCTGTTGGTGACTGGACCAAATCTCCACCTGGAATTTCCATTTTTGTTGACCCAAGAGAAGTTTGA 1329 0.5207 MGDEFHCGVVIREFDPKRDREKVEEVERICEVGPSGKLSIFTDLLGDPICRVRHSPSFLMLVAEIGDEIVGMIRGCIKTITCGKKLSRNTKHSSDTSNKHLPVYAKVAYILGLRVSPSHRRMGIGLELVHRTEAWFRDNGAEYSYMATENDNLASVKLFTDKCGYTKFRTPSILVNPVFAHRLTLSPKVKIIHLAPAQAEAIYRRRFATTEFFPRDIDAVLNNKLSLGTFLALPSGATWKGTDHFLSDPPNSWAILSLWNSKEVFTLQVRGASRVKRALAMTTRVVDKALPFLRLPSFPDFFRPFGFHFVYGIGGEGPXXXPRVVDKALPFLRLPSFPDFFRPFGFHFVYGIGGEGPDAVKMVKTLCGFAHNVAKERGCGAVVTEVSGQEPLRFGIPHWKRLSCDEDLWCIKRLGEDYSDGSVGDWTKSPPGISIFVDPREV 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30880g00003 442 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 46 169 IPR016181 -
Stsc30880g00003 442 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 9 319 - -
Stsc30880g00003 442 FunFam Probable N-acetyltransferase HLS1-like 18 172 - -
Stsc30880g00003 442 Gene3D - 41 171 - -
Stsc30880g00003 442 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 9 186 IPR000182 GO:0016747
Stsc30880g00003 442 Pfam Acetyltransferase (GNAT) family 54 165 IPR000182 GO:0016747
Stsc30880g00003 442 CDD NAT_SF 60 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30880g00003 Stsc-Chr30880 23613 26010 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Stsc30880g00003 Acetyltransf_1 1.4e-16 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30880g00003 - - qsa:O6P43_024561 624.394