Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30880g00002 ATGGCCATAAGGCCCTTCCATTTCCAATCTTCCACCTTCTCCCGCGACACTTTCCTCTCTCTTTTCCGCACTTACCACAATCTCCATCTTCATTCCCCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTTCCGTACTCAAACCCTCCCCTCTCTCCCCTCAATTCTCATCCTCCGTAGCTTCGCCGCCTCGGCGGCATCTTCATTCTCTCGCCCCCACCGCTCTCATTCTCCTCCGCCGCCACCACCTGACACCCTGGCGCAGAAGATTGGAAAGTCCACTCGCCGCCCCGGCGCCACCTCCAAGGCCAGGATTTATGCTGATATCAACGTCGTCCGTCCCAAGGAATATTGGGACTATGAGAACCTCACCGTCCAGTGGGGGGAGCAAGATGACTATGAGGTTGTGAGGAAGGTGGGAAGAGGGAAATACAGTGAGGTCTTCGAGGGCGTTCACTCCACCGATAATGAAAAGTGCATCATCAAGATCCTCAAACCCGTCAAGAAGAAAAAGATAAAGAGGGAGATCAAAATATTGCAAAATCTTTGTGGAGGGCCCAATGTTATAAAGCTGCTTGACATTGTTAGAGACCAGCAATCAAAGACCCCAAGCCTTATATTTGAATATGTCAATAACACTGATTTTAAAGTGCTCTATCCTACCCTGTCAGATTATGATATCCGATATTATATATACGAACTTCTAAAGGCATTGGATTATTGCCACTCTCAAGGAATCATGCATCGCGATGTAAAGCCACATAATGTAATGATTGACCATGAGCAGCGCAAGCTTCGTCTTATAGATTGGGGTCTTGCAGAGTTTTATCATCCTGGGAAAGAATATAATGTTCGTGTTGCCTCCAGATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAGGACTATGATTACTCTCTCGATTTATGGAGTCTTGGTTGTATGTTTGCTGGAATGATTTTTCGTAAGGAGCCATTCTTTTACGGACATGATAACTATGATCAACTAGTCAAAATAGCCAAGGTACTTGGAACAGATGAATTAAATGCATATCTGAACAAGTACCGCATAGAGTTGGACCCAAATCTAGCAGCACTTGTTGGGAGGCATGGCAGAAAGCCATGGTCGAAGTTTATTAGTGTCGAAAACCAACGCTTGGCAGTTCCTGAGGCTATTGACTTCGTTGACAAGTTACTCCGGTATGATCACCAAGAACGACCCACTGCAAAAGAAGCCATGGCCCACCCTTACTTCAATCCTGTCAGAAATGCAGAAAGCAGCCGAACTCGTACACATTGA 1302 0.4555 MAIRPFHFQSSTFSRDTFLSLFRTYHNLHLHSPFSSSSSSSSSSFRTQTLPSLPSILILRSFAASAASSFSRPHRSHSPPPPPPDTLAQKIGKSTRRPGATSKARIYADINVVRPKEYWDYENLTVQWGEQDDYEVVRKVGRGKYSEVFEGVHSTDNEKCIIKILKPVKKKKIKREIKILQNLCGGPNVIKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELNAYLNKYRIELDPNLAALVGRHGRKPWSKFISVENQRLAVPEAIDFVDKLLRYDHQERPTAKEAMAHPYFNPVRNAESSRTRTH 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30880g00002 433 FunFam Casein kinase II subunit alpha 211 422 - -
Stsc30880g00002 433 CDD STKc_CK2_alpha 115 419 IPR045216 GO:0004674|GO:0006468
Stsc30880g00002 433 MobiDBLite consensus disorder prediction 413 433 - -
Stsc30880g00002 433 Gene3D Phosphorylase Kinase; domain 1 134 210 - -
Stsc30880g00002 433 FunFam Casein kinase II subunit alpha 120 210 - -
Stsc30880g00002 433 PANTHER CASEIN KINASE II SUBUNIT ALPHA 98 429 IPR045216 GO:0004674|GO:0006468
Stsc30880g00002 433 ProSiteProfiles Protein kinase domain profile. 134 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30880g00002 433 Gene3D Transferase(Phosphotransferase) domain 1 211 419 - -
Stsc30880g00002 433 Pfam Protein kinase domain 134 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30880g00002 433 SUPERFAMILY Protein kinase-like (PK-like) 108 423 IPR011009 -
Stsc30880g00002 433 ProSitePatterns Protein kinases ATP-binding region signature. 140 163 IPR017441 GO:0005524
Stsc30880g00002 433 SMART serkin_6 134 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30880g00002 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Stsc30880g00002 433 MobiDBLite consensus disorder prediction 70 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30880g00002 Stsc-Chr30880 6262 9708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30880g00002 132 420 Core Cell Cycle Gene Families AT1G76540 30.696 1.43e-41 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Stsc30880g00002 Pkinase 8.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30880g00002 K03097 - qsa:O6P43_024562 674.47