Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30880g00001 ATGGCCATAAGGCCCTTCCAATTCCAATCTTCCACCTTCTCCCGCGACACTTTCCTCTTTCTTTTTCGCACAAACCACAATCTGCATTTTCTTTTGTTGATAATTCACAATCTGCATCTTCGTACCCATAATATTTCTTCTTCCTGTTCCTCTTCCTCTTCTTTCCGTACCCAAACCTTCCCCTCTCTCCCCTCAATTCTCCTTCTCCGTAGCTTCGCCGCCTCGGCAGCATCTTCATTCTCTCGCTTTCCTCCTCCACCACCACCTGACACCCTGGCGCAGAAGATTGGAAAGTCCACTCGCCGCCCCGGCGCCACCTCCAAGGCCAGGATTTATGCCGATATCAACGTCGTCCGTCCCAAGGAATATTGGGACTATGAGAACCTCACTGTCCAGTGGGGGGAGCAAGATGACTATGAGGTTGTGAAGAAGGTGGGAAGAGGGAAATACAGTGAGGTCTTCGAGGGCGTTCACTCCACCGATAATGAAAAGTGCATCATCAAGATCCTCAAACCCGTCAAGAAGAAAAAGATAAAGAGGGAGATCAAAATATTGCAAAATCTTTGTGGAGGGCCCAATGTTATAAAGCTGCTTGACATTGTTAGAGACCAGCAATCAAAGACCCCAAGCCTTATATTTGAATATGTCAATAACACTGATTTTAAAGTGCTCTACCCTACCCTGTCAGATTATGATATCCGATATTATATCTACGAACTTCTAAAGGCACTGGATTATTGCCACTCTCAAGGAATCATGCATCGGGATGTAAAGCCACATAATGTAATGATCGACCATGAGCAGCGCAAGCTTCGCCTTATAGATTGGGGTCTTGCAGAGTTTTATCATCCTGGGAAAGAATATAATGTTCGTGTTGCCTCCAGATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAGGACTATGATTATTCTCTCGATTTATGGAGTCTCGGTTGTATGTTTGCCGGAATGATTTTTCGTAAGGAGCCTTTCTTTTATGGACATGATAATTATGATCAACTAGTCAAAATAGCCAAGGTACTTGGAACAGATGAATTAAATGCGTATCTGAACAAGTACCACATAGAGTTGGACCCAAATCTTGCAGCACTTGTTGGGAGGCATGGGAGAAAGCCATGGTCGAAGTTTATTAGTGTCGAAAACCAACACTTGGCAGTTCCTGAGGCTATTGACTTCGTTGACAAGTTACTCCGGTATGATCACCAAGAACGACCCACTGCAAAAGAAGCCATGGCCCACCCTTACTTCAATCCTGTCAGAAATGCAGAAAGCAGCCGAACTCATACACGTTGA 1317 0.4472 MAIRPFQFQSSTFSRDTFLFLFRTNHNLHFLLLIIHNLHLRTHNISSSCSSSSSFRTQTFPSLPSILLLRSFAASAASSFSRFPPPPPPDTLAQKIGKSTRRPGATSKARIYADINVVRPKEYWDYENLTVQWGEQDDYEVVKKVGRGKYSEVFEGVHSTDNEKCIIKILKPVKKKKIKREIKILQNLCGGPNVIKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELNAYLNKYHIELDPNLAALVGRHGRKPWSKFISVENQHLAVPEAIDFVDKLLRYDHQERPTAKEAMAHPYFNPVRNAESSRTHTR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30880g00001 438 Pfam Protein kinase domain 139 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30880g00001 438 MobiDBLite consensus disorder prediction 80 105 - -
Stsc30880g00001 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Stsc30880g00001 438 ProSiteProfiles Protein kinase domain profile. 139 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30880g00001 438 ProSitePatterns Protein kinases ATP-binding region signature. 145 168 IPR017441 GO:0005524
Stsc30880g00001 438 MobiDBLite consensus disorder prediction 418 438 - -
Stsc30880g00001 438 CDD STKc_CK2_alpha 120 424 IPR045216 GO:0004674|GO:0006468
Stsc30880g00001 438 FunFam Casein kinase II subunit alpha 125 215 - -
Stsc30880g00001 438 FunFam Casein kinase II subunit alpha 216 427 - -
Stsc30880g00001 438 SUPERFAMILY Protein kinase-like (PK-like) 113 428 IPR011009 -
Stsc30880g00001 438 PANTHER CASEIN KINASE II SUBUNIT ALPHA 103 433 IPR045216 GO:0004674|GO:0006468
Stsc30880g00001 438 Gene3D Transferase(Phosphotransferase) domain 1 216 424 - -
Stsc30880g00001 438 SMART serkin_6 139 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30880g00001 438 Gene3D Phosphorylase Kinase; domain 1 139 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30880g00001 Stsc-Chr30880 684 4618 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30880g00001 137 425 Core Cell Cycle Gene Families AT1G76540 30.573 1.68e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Stsc30880g00001 Pkinase 6.9e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30880g00001 K03097 - qsa:O6P43_024562 671.774