Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30877g00001 ATGATGAAGGAAGATTCATATGCATCAACAGTGATGGAGGAAGAGGATGATGTTCCACTTCCAGGGTTTAGATTCCACCCAACAGATGAAGAGCTAGTGAGTTTCTATCTGAAGAGGAAGCTTGACAAGAAACCAATCAGCATAGAACTCATCAAACAGATTGATATCTACAAATATGATCCTTGGGATCTTCCAACGAGTGGAAGTGGAAGTGGAGGAGAGAAGGAAGGTTACTTCTTTTGCAAGAGAGGGAGGAAGTATAGGAACAGCATAAGGCCTAACAGAGTCACTGGTTCCGGCTTCTGGAAGGCAACCGGGATAGACAAGCCAGTCTACTCCCACGGCGGCGAAGGAAATGACTGCATCGGACTTAAGAAGACGCTGGTCTACTACCGTGGCAGTGCCGGTAAAGGCACAAAGACTGATTGGATGATGCACGAGTTCCGCCTCCCTTCTGCCAATACAGAAAACAATACAAACCTACTTCTCAACGCCAAGAATAATAATCATATCAACAATGCTGATTTTGCCCAAGAAGCTGAAATCTGGACATTGTGTAGAATATTCAAGAGAAATGTGTCGCAAAGAAAGCACACATCAGATTTGAGATCACATTTAGTAGCAACTAATAACAAGCACAAAACCACGAAAACCCTTCTTGTTCAATCCAATAACAATAATCATTATCAACATCATCAACACCAAGAATCTTACATCAACTTTGGTGCAACCATCATTGGCCATCACCATTATCAAAATGAACAGAAGCCAGCGATTAACTACACAGCATTAGGCAGCAATAACAACAATGATCAAACCCAAAGGAACAACAACAACAACAACCATCATCATCATCAGTTGAACTATCATCACCCTTCTTCAGTGGTGGCTACTACTAATGTTGCACAGCAACAACAACAACAACAAATGATGGCTCCAACTTCTAACATGTGGATTAATCCTTCGGCGTTGAACGATTTCTTTGGATTTGATGATGATAACTGGGATGAGCTTGGATCCGTTGTCAAATTTGCTGTTGATTCTCCTAGCTTGTAA 1056 0.4176 MMKEDSYASTVMEEEDDVPLPGFRFHPTDEELVSFYLKRKLDKKPISIELIKQIDIYKYDPWDLPTSGSGSGGEKEGYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSHGGEGNDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSANTENNTNLLLNAKNNNHINNADFAQEAEIWTLCRIFKRNVSQRKHTSDLRSHLVATNNKHKTTKTLLVQSNNNNHYQHHQHQESYINFGATIIGHHHYQNEQKPAINYTALGSNNNNDQTQRNNNNNNHHHHQLNYHHPSSVVATTNVAQQQQQQQMMAPTSNMWINPSALNDFFGFDDDNWDELGSVVKFAVDSPSL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30877g00001 351 ProSiteProfiles NAC domain profile. 19 191 IPR003441 GO:0003677|GO:0006355
Stsc30877g00001 351 MobiDBLite consensus disorder prediction 263 287 - -
Stsc30877g00001 351 Gene3D NAC domain 28 195 IPR036093 GO:0003677|GO:0006355
Stsc30877g00001 351 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 279 - -
Stsc30877g00001 351 Pfam No apical meristem (NAM) protein 21 150 IPR003441 GO:0003677|GO:0006355
Stsc30877g00001 351 MobiDBLite consensus disorder prediction 263 283 - -
Stsc30877g00001 351 SUPERFAMILY NAC domain 19 191 IPR036093 GO:0003677|GO:0006355
Stsc30877g00001 351 FunFam NAC domain-containing protein 35 28 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30877g00001 Stsc-Chr30877 735 3091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30877g00001 1 233 NAC Transcription Factor Family AT5G39820 51.452 2.61e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc30877g00001 NAM 4.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30877g00001 - - aip:107612193 517.309